Strain Fitness in Variovorax sp. SCN45 around GFF3062

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3061 and GFF3062 overlap by 11 nucleotidesGFF3062 and GFF3063 are separated by 37 nucleotides GFF3061 - BUG/TctC family periplasmic protein, at 494,982 to 495,953 GFF3061 GFF3062 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 495,943 to 496,653 GFF3062 GFF3063 - mandelate racemase/muconate lactonizing enzyme family protein, at 496,691 to 497,857 GFF3063 Position (kb) 495 496 497Strain fitness (log2 ratio) -2 -1 0 1at 495.246 kb on + strand, within GFF3061at 495.309 kb on + strand, within GFF3061at 495.310 kb on - strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.418 kb on - strand, within GFF3061at 495.418 kb on - strand, within GFF3061at 495.418 kb on - strand, within GFF3061at 495.522 kb on + strand, within GFF3061at 495.522 kb on + strand, within GFF3061at 495.537 kb on + strand, within GFF3061at 495.537 kb on + strand, within GFF3061at 495.538 kb on - strand, within GFF3061at 495.538 kb on - strand, within GFF3061at 495.621 kb on + strand, within GFF3061at 495.622 kb on - strand, within GFF3061at 495.622 kb on - strand, within GFF3061at 495.720 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.730 kb on - strand, within GFF3061at 495.730 kb on - strand, within GFF3061at 495.738 kb on + strand, within GFF3061at 496.372 kb on + strand, within GFF3062at 496.372 kb on + strand, within GFF3062at 496.372 kb on + strand, within GFF3062at 496.373 kb on - strand, within GFF3062at 496.373 kb on - strand, within GFF3062at 496.373 kb on - strand, within GFF3062at 496.751 kb on + strandat 497.082 kb on - strand, within GFF3063at 497.082 kb on - strand, within GFF3063at 497.082 kb on - strand, within GFF3063at 497.153 kb on + strand, within GFF3063at 497.154 kb on - strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.156 kb on + strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.157 kb on - strand, within GFF3063at 497.159 kb on + strand, within GFF3063at 497.159 kb on + strand, within GFF3063at 497.204 kb on + strand, within GFF3063at 497.204 kb on + strand, within GFF3063at 497.204 kb on + strand, within GFF3063at 497.220 kb on - strand, within GFF3063at 497.399 kb on + strand, within GFF3063at 497.400 kb on - strand, within GFF3063at 497.427 kb on - strand, within GFF3063at 497.456 kb on + strand, within GFF3063at 497.456 kb on + strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.457 kb on - strand, within GFF3063at 497.576 kb on + strand, within GFF3063at 497.576 kb on + strand, within GFF3063at 497.577 kb on - strand, within GFF3063at 497.577 kb on - strand, within GFF3063

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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495,246 + GFF3061 0.27 +0.9
495,309 + GFF3061 0.34 +0.5
495,310 - GFF3061 0.34 -0.3
495,417 + GFF3061 0.45 +0.0
495,417 + GFF3061 0.45 -0.4
495,417 + GFF3061 0.45 +0.3
495,417 + GFF3061 0.45 -0.0
495,418 - GFF3061 0.45 +1.4
495,418 - GFF3061 0.45 -0.1
495,418 - GFF3061 0.45 +1.1
495,522 + GFF3061 0.56 -1.0
495,522 + GFF3061 0.56 -0.1
495,537 + GFF3061 0.57 +1.6
495,537 + GFF3061 0.57 +1.1
495,538 - GFF3061 0.57 -1.1
495,538 - GFF3061 0.57 +0.8
495,621 + GFF3061 0.66 -0.4
495,622 - GFF3061 0.66 +0.1
495,622 - GFF3061 0.66 +0.1
495,720 + GFF3061 0.76 +0.9
495,729 + GFF3061 0.77 -0.0
495,729 + GFF3061 0.77 +0.2
495,729 + GFF3061 0.77 +0.2
495,729 + GFF3061 0.77 -0.1
495,730 - GFF3061 0.77 -0.1
495,730 - GFF3061 0.77 -1.3
495,738 + GFF3061 0.78 -0.3
496,372 + GFF3062 0.60 -0.3
496,372 + GFF3062 0.60 +0.4
496,372 + GFF3062 0.60 +0.0
496,373 - GFF3062 0.60 -0.4
496,373 - GFF3062 0.60 +0.3
496,373 - GFF3062 0.60 -0.3
496,751 + +1.0
497,082 - GFF3063 0.34 -0.7
497,082 - GFF3063 0.34 -0.4
497,082 - GFF3063 0.34 +0.3
497,153 + GFF3063 0.40 +0.4
497,154 - GFF3063 0.40 -0.9
497,156 + GFF3063 0.40 -0.1
497,156 + GFF3063 0.40 -0.1
497,156 + GFF3063 0.40 -1.1
497,156 + GFF3063 0.40 -0.3
497,156 + GFF3063 0.40 -0.1
497,156 + GFF3063 0.40 +0.3
497,156 + GFF3063 0.40 +0.4
497,156 + GFF3063 0.40 -0.3
497,157 - GFF3063 0.40 -0.4
497,157 - GFF3063 0.40 -1.4
497,157 - GFF3063 0.40 +0.1
497,157 - GFF3063 0.40 +0.9
497,157 - GFF3063 0.40 -0.4
497,159 + GFF3063 0.40 -0.1
497,159 + GFF3063 0.40 -0.7
497,204 + GFF3063 0.44 -1.8
497,204 + GFF3063 0.44 +0.0
497,204 + GFF3063 0.44 -0.5
497,220 - GFF3063 0.45 -0.9
497,399 + GFF3063 0.61 -0.1
497,400 - GFF3063 0.61 -1.3
497,427 - GFF3063 0.63 -0.8
497,456 + GFF3063 0.66 +0.0
497,456 + GFF3063 0.66 -0.1
497,457 - GFF3063 0.66 -0.4
497,457 - GFF3063 0.66 +1.6
497,457 - GFF3063 0.66 -0.8
497,457 - GFF3063 0.66 -1.8
497,576 + GFF3063 0.76 -0.7
497,576 + GFF3063 0.76 -0.8
497,577 - GFF3063 0.76 -0.1
497,577 - GFF3063 0.76 -0.5

Or see this region's nucleotide sequence