Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3019 and GFF3020 are separated by 3 nucleotides GFF3020 and GFF3021 are separated by 63 nucleotides GFF3021 and GFF3022 overlap by 4 nucleotides GFF3022 and GFF3023 are separated by 23 nucleotides
GFF3019 - hypothetical protein, at 448,837 to 449,511
GFF3019
GFF3020 - FIG00966904: hypothetical protein, at 449,515 to 449,904
GFF3020
GFF3021 - no description, at 449,968 to 450,150
GFF3021
GFF3022 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 450,147 to 451,199
GFF3022
GFF3023 - C4-dicarboxylate transport protein, at 451,223 to 452,497
GFF3023
Position (kb) 450
451
452 Strain fitness (log2 ratio) -1
0
1
2 at 449.176 kb on + strand, within GFF3019 at 449.176 kb on + strand, within GFF3019 at 449.209 kb on + strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.210 kb on - strand, within GFF3019 at 449.282 kb on - strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.317 kb on + strand, within GFF3019 at 449.318 kb on - strand, within GFF3019 at 449.944 kb on + strand at 449.944 kb on + strand at 449.945 kb on - strand at 450.756 kb on + strand, within GFF3022 at 450.756 kb on + strand, within GFF3022 at 450.757 kb on - strand, within GFF3022 at 450.757 kb on - strand, within GFF3022 at 450.892 kb on - strand, within GFF3022 at 451.125 kb on + strand at 451.242 kb on - strand at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.352 kb on + strand, within GFF3023 at 451.353 kb on - strand, within GFF3023 at 451.353 kb on - strand, within GFF3023 at 451.817 kb on + strand, within GFF3023 at 451.817 kb on + strand, within GFF3023 at 451.818 kb on - strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.911 kb on + strand, within GFF3023 at 451.912 kb on - strand, within GFF3023
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 449,176 + GFF3019 0.50 -0.6 449,176 + GFF3019 0.50 -0.9 449,209 + GFF3019 0.55 -0.2 449,210 - GFF3019 0.55 +0.5 449,210 - GFF3019 0.55 -0.2 449,210 - GFF3019 0.55 +0.1 449,210 - GFF3019 0.55 +1.1 449,210 - GFF3019 0.55 -0.4 449,282 - GFF3019 0.66 +0.9 449,317 + GFF3019 0.71 +0.1 449,317 + GFF3019 0.71 -0.2 449,317 + GFF3019 0.71 +0.4 449,318 - GFF3019 0.71 +0.2 449,944 + -0.1 449,944 + -0.1 449,945 - +0.0 450,756 + GFF3022 0.58 -1.2 450,756 + GFF3022 0.58 -0.7 450,757 - GFF3022 0.58 -0.4 450,757 - GFF3022 0.58 +0.2 450,892 - GFF3022 0.71 -1.3 451,125 + -1.1 451,242 - +0.7 451,352 + GFF3023 0.10 -0.3 451,352 + GFF3023 0.10 -1.5 451,352 + GFF3023 0.10 -0.3 451,352 + GFF3023 0.10 +2.3 451,353 - GFF3023 0.10 -0.3 451,353 - GFF3023 0.10 +0.6 451,817 + GFF3023 0.47 +0.3 451,817 + GFF3023 0.47 +0.3 451,818 - GFF3023 0.47 -0.4 451,911 + GFF3023 0.54 -0.2 451,911 + GFF3023 0.54 +0.1 451,911 + GFF3023 0.54 +0.1 451,912 - GFF3023 0.54 +0.6
Or see this region's nucleotide sequence