Strain Fitness in Variovorax sp. SCN45 around GFF2981

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2980 and GFF2981 are separated by 357 nucleotidesGFF2981 and GFF2982 overlap by 4 nucleotidesGFF2982 and GFF2983 are separated by 14 nucleotides GFF2980 - Intracellular PHB depolymerase PhaZ2, at 410,336 to 411,556 GFF2980 GFF2981 - no description, at 411,914 to 412,807 GFF2981 GFF2982 - Histone acetyltransferase HPA2 and related acetyltransferases, at 412,804 to 413,433 GFF2982 GFF2983 - Transcriptional regulator YfeR, LysR family, at 413,448 to 414,401 GFF2983 Position (kb) 411 412 413Strain fitness (log2 ratio) -1 0 1 2 3 4at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.140 kb on + strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.141 kb on - strand, within GFF2980at 411.194 kb on + strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.195 kb on - strand, within GFF2980at 411.203 kb on + strand, within GFF2980at 411.203 kb on + strand, within GFF2980at 411.204 kb on - strand, within GFF2980at 411.204 kb on - strand, within GFF2980at 411.236 kb on + strand, within GFF2980at 411.236 kb on + strand, within GFF2980at 411.236 kb on + strand, within GFF2980at 411.237 kb on - strand, within GFF2980at 411.237 kb on - strand, within GFF2980at 411.269 kb on + strand, within GFF2980at 411.270 kb on - strand, within GFF2980at 411.270 kb on - strand, within GFF2980at 411.429 kb on - strand, within GFF2980at 411.467 kb on + strandat 411.467 kb on + strandat 411.506 kb on + strandat 411.507 kb on - strandat 411.507 kb on - strandat 411.507 kb on - strandat 411.629 kb on + strandat 411.630 kb on - strandat 411.630 kb on - strandat 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.620 kb on - strand, within GFF2981at 412.620 kb on - strand, within GFF2981at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.035 kb on + strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.071 kb on + strand, within GFF2982at 413.072 kb on - strand, within GFF2982at 413.072 kb on - strand, within GFF2982at 413.093 kb on + strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.143 kb on + strand, within GFF2982at 413.144 kb on - strand, within GFF2982at 413.144 kb on - strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.185 kb on + strand, within GFF2982at 413.279 kb on - strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.572 kb on + strand, within GFF2983at 413.572 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.701 kb on + strand, within GFF2983at 413.702 kb on - strand, within GFF2983at 413.716 kb on + strand, within GFF2983

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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411,140 + GFF2980 0.66 +0.1
411,140 + GFF2980 0.66 -0.4
411,140 + GFF2980 0.66 -0.1
411,140 + GFF2980 0.66 -0.2
411,140 + GFF2980 0.66 -0.6
411,140 + GFF2980 0.66 +0.1
411,140 + GFF2980 0.66 -0.2
411,140 + GFF2980 0.66 -1.0
411,140 + GFF2980 0.66 -0.6
411,140 + GFF2980 0.66 +0.1
411,140 + GFF2980 0.66 +0.3
411,140 + GFF2980 0.66 +0.0
411,140 + GFF2980 0.66 +0.6
411,140 + GFF2980 0.66 -0.2
411,140 + GFF2980 0.66 +1.7
411,140 + GFF2980 0.66 -0.2
411,140 + GFF2980 0.66 -1.2
411,140 + GFF2980 0.66 +0.4
411,140 + GFF2980 0.66 -0.3
411,140 + GFF2980 0.66 -0.2
411,140 + GFF2980 0.66 -0.8
411,140 + GFF2980 0.66 +1.5
411,141 - GFF2980 0.66 +0.1
411,141 - GFF2980 0.66 -0.3
411,141 - GFF2980 0.66 -0.3
411,141 - GFF2980 0.66 -1.7
411,141 - GFF2980 0.66 +0.6
411,141 - GFF2980 0.66 -0.5
411,141 - GFF2980 0.66 +0.4
411,141 - GFF2980 0.66 -0.2
411,141 - GFF2980 0.66 -0.1
411,141 - GFF2980 0.66 -1.0
411,141 - GFF2980 0.66 +0.1
411,141 - GFF2980 0.66 +0.4
411,141 - GFF2980 0.66 +0.5
411,141 - GFF2980 0.66 -0.3
411,141 - GFF2980 0.66 -0.7
411,141 - GFF2980 0.66 +0.6
411,141 - GFF2980 0.66 -0.7
411,141 - GFF2980 0.66 +2.0
411,141 - GFF2980 0.66 +0.5
411,141 - GFF2980 0.66 -0.5
411,141 - GFF2980 0.66 -0.0
411,141 - GFF2980 0.66 -0.6
411,141 - GFF2980 0.66 -1.3
411,141 - GFF2980 0.66 -0.4
411,141 - GFF2980 0.66 -0.1
411,141 - GFF2980 0.66 +0.0
411,141 - GFF2980 0.66 +0.1
411,141 - GFF2980 0.66 -0.4
411,141 - GFF2980 0.66 +0.1
411,194 + GFF2980 0.70 -0.5
411,195 - GFF2980 0.70 -0.4
411,195 - GFF2980 0.70 -0.6
411,195 - GFF2980 0.70 -0.3
411,195 - GFF2980 0.70 +0.1
411,203 + GFF2980 0.71 -0.3
411,203 + GFF2980 0.71 +0.4
411,204 - GFF2980 0.71 -0.6
411,204 - GFF2980 0.71 -0.6
411,236 + GFF2980 0.74 -0.3
411,236 + GFF2980 0.74 -1.6
411,236 + GFF2980 0.74 +0.4
411,237 - GFF2980 0.74 -0.5
411,237 - GFF2980 0.74 -0.6
411,269 + GFF2980 0.76 -1.4
411,270 - GFF2980 0.76 -0.5
411,270 - GFF2980 0.76 -0.7
411,429 - GFF2980 0.90 +2.4
411,467 + +0.6
411,467 + +1.5
411,506 + +0.0
411,507 - +0.7
411,507 - -0.4
411,507 - -0.1
411,629 + -0.5
411,630 - -1.0
411,630 - +0.5
412,025 + GFF2981 0.12 -0.5
412,025 + GFF2981 0.12 +0.4
412,025 + GFF2981 0.12 +0.4
412,025 + GFF2981 0.12 +1.2
412,025 + GFF2981 0.12 -0.5
412,026 - GFF2981 0.13 -0.7
412,026 - GFF2981 0.13 -0.3
412,026 - GFF2981 0.13 +3.8
412,026 - GFF2981 0.13 -0.8
412,026 - GFF2981 0.13 +1.6
412,026 - GFF2981 0.13 -0.0
412,026 - GFF2981 0.13 -0.4
412,026 - GFF2981 0.13 -0.8
412,619 + GFF2981 0.79 -1.2
412,619 + GFF2981 0.79 +2.0
412,619 + GFF2981 0.79 +0.0
412,620 - GFF2981 0.79 -1.2
412,620 - GFF2981 0.79 -0.6
413,029 + GFF2982 0.36 -0.2
413,029 + GFF2982 0.36 -0.3
413,029 + GFF2982 0.36 +2.5
413,029 + GFF2982 0.36 -0.6
413,030 - GFF2982 0.36 +0.1
413,030 - GFF2982 0.36 +0.4
413,030 - GFF2982 0.36 -0.1
413,030 - GFF2982 0.36 +0.7
413,030 - GFF2982 0.36 -0.4
413,030 - GFF2982 0.36 -0.7
413,030 - GFF2982 0.36 -0.4
413,030 - GFF2982 0.36 -0.5
413,030 - GFF2982 0.36 -0.7
413,035 + GFF2982 0.37 -0.5
413,036 - GFF2982 0.37 -0.2
413,036 - GFF2982 0.37 -0.0
413,036 - GFF2982 0.37 -0.9
413,036 - GFF2982 0.37 -0.7
413,071 + GFF2982 0.42 +0.1
413,072 - GFF2982 0.43 -1.1
413,072 - GFF2982 0.43 -0.3
413,093 + GFF2982 0.46 +0.1
413,094 - GFF2982 0.46 +0.1
413,094 - GFF2982 0.46 -0.2
413,094 - GFF2982 0.46 +0.1
413,094 - GFF2982 0.46 +0.4
413,094 - GFF2982 0.46 -0.7
413,143 + GFF2982 0.54 -1.4
413,144 - GFF2982 0.54 +0.5
413,144 - GFF2982 0.54 -0.5
413,155 + GFF2982 0.56 -0.4
413,155 + GFF2982 0.56 +0.9
413,155 + GFF2982 0.56 -0.8
413,155 + GFF2982 0.56 -0.0
413,185 + GFF2982 0.60 -0.6
413,279 - GFF2982 0.75 +0.0
413,320 + GFF2982 0.82 +0.6
413,320 + GFF2982 0.82 +2.8
413,320 + GFF2982 0.82 +0.1
413,321 - GFF2982 0.82 -0.9
413,321 - GFF2982 0.82 -0.1
413,321 - GFF2982 0.82 -0.2
413,321 - GFF2982 0.82 -0.1
413,572 + GFF2983 0.13 +0.2
413,572 + GFF2983 0.13 -0.2
413,653 + GFF2983 0.21 -0.6
413,653 + GFF2983 0.21 +1.9
413,653 + GFF2983 0.21 -0.6
413,653 + GFF2983 0.21 -0.3
413,653 + GFF2983 0.21 -0.5
413,653 + GFF2983 0.21 -0.6
413,653 + GFF2983 0.21 -1.3
413,654 - GFF2983 0.22 +0.2
413,654 - GFF2983 0.22 -0.8
413,654 - GFF2983 0.22 -0.3
413,654 - GFF2983 0.22 -1.5
413,654 - GFF2983 0.22 -0.6
413,654 - GFF2983 0.22 -0.4
413,654 - GFF2983 0.22 -0.1
413,654 - GFF2983 0.22 -1.1
413,654 - GFF2983 0.22 +0.3
413,701 + GFF2983 0.27 +0.7
413,702 - GFF2983 0.27 -0.1
413,716 + GFF2983 0.28 +0.0

Or see this region's nucleotide sequence