Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2976 and GFF2977 overlap by 4 nucleotides GFF2977 and GFF2978 are separated by 7 nucleotides GFF2978 and GFF2979 are separated by 0 nucleotides GFF2979 and GFF2980 are separated by 81 nucleotides
GFF2976 - hypothetical protein, at 407,552 to 408,604
GFF2976
GFF2977 - hypothetical protein, at 408,601 to 409,242
GFF2977
GFF2978 - Aromatic ring-cleaving dioxygenase, at 409,250 to 409,597
GFF2978
GFF2979 - Glutathione S-transferase (EC 2.5.1.18), at 409,598 to 410,254
GFF2979
GFF2980 - Intracellular PHB depolymerase PhaZ2, at 410,336 to 411,556
GFF2980
Position (kb) 409
410 Strain fitness (log2 ratio) -2
-1
0
1 at 408.395 kb on + strand, within GFF2976 at 408.395 kb on + strand, within GFF2976 at 408.395 kb on + strand, within GFF2976 at 408.419 kb on + strand, within GFF2976 at 408.419 kb on + strand, within GFF2976 at 408.419 kb on + strand, within GFF2976 at 408.419 kb on + strand, within GFF2976 at 408.419 kb on + strand, within GFF2976 at 408.419 kb on + strand, within GFF2976 at 408.420 kb on - strand, within GFF2976 at 408.420 kb on - strand, within GFF2976 at 408.420 kb on - strand, within GFF2976 at 408.497 kb on + strand, within GFF2976 at 408.557 kb on + strand at 408.874 kb on + strand, within GFF2977 at 408.970 kb on + strand, within GFF2977 at 408.971 kb on - strand, within GFF2977 at 408.971 kb on - strand, within GFF2977 at 409.046 kb on - strand, within GFF2977 at 409.108 kb on + strand, within GFF2977 at 409.108 kb on + strand, within GFF2977 at 409.108 kb on + strand, within GFF2977 at 409.109 kb on - strand, within GFF2977 at 409.275 kb on - strand at 409.275 kb on - strand at 409.283 kb on + strand at 409.298 kb on + strand, within GFF2978 at 409.298 kb on + strand, within GFF2978 at 409.299 kb on - strand, within GFF2978 at 409.299 kb on - strand, within GFF2978 at 409.299 kb on - strand, within GFF2978 at 409.595 kb on + strand at 409.599 kb on + strand at 409.599 kb on + strand at 409.599 kb on + strand at 409.599 kb on + strand at 409.600 kb on - strand at 409.600 kb on - strand at 409.600 kb on - strand at 409.695 kb on + strand, within GFF2979 at 409.728 kb on + strand, within GFF2979 at 409.729 kb on - strand, within GFF2979 at 409.729 kb on - strand, within GFF2979 at 409.758 kb on + strand, within GFF2979 at 409.758 kb on + strand, within GFF2979 at 409.758 kb on + strand, within GFF2979 at 409.759 kb on - strand, within GFF2979 at 409.759 kb on - strand, within GFF2979 at 409.809 kb on + strand, within GFF2979 at 409.809 kb on + strand, within GFF2979 at 409.810 kb on - strand, within GFF2979 at 409.810 kb on - strand, within GFF2979 at 410.031 kb on + strand, within GFF2979 at 410.217 kb on + strand at 410.217 kb on + strand at 410.217 kb on + strand at 410.218 kb on - strand at 410.218 kb on - strand at 410.351 kb on + strand at 410.399 kb on + strand at 410.399 kb on + strand at 410.399 kb on + strand at 410.399 kb on + strand at 410.400 kb on - strand at 410.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 408,395 + GFF2976 0.80 -0.7 408,395 + GFF2976 0.80 -1.0 408,395 + GFF2976 0.80 +0.3 408,419 + GFF2976 0.82 -0.7 408,419 + GFF2976 0.82 -0.0 408,419 + GFF2976 0.82 -0.3 408,419 + GFF2976 0.82 +1.0 408,419 + GFF2976 0.82 -1.5 408,419 + GFF2976 0.82 +0.1 408,420 - GFF2976 0.82 -0.6 408,420 - GFF2976 0.82 +0.1 408,420 - GFF2976 0.82 +0.6 408,497 + GFF2976 0.90 -0.9 408,557 + -0.9 408,874 + GFF2977 0.43 -1.0 408,970 + GFF2977 0.57 -0.0 408,971 - GFF2977 0.58 -1.6 408,971 - GFF2977 0.58 -0.6 409,046 - GFF2977 0.69 +0.6 409,108 + GFF2977 0.79 -0.8 409,108 + GFF2977 0.79 -1.0 409,108 + GFF2977 0.79 -1.3 409,109 - GFF2977 0.79 +0.2 409,275 - -0.2 409,275 - -0.0 409,283 + -2.4 409,298 + GFF2978 0.14 +0.0 409,298 + GFF2978 0.14 +1.7 409,299 - GFF2978 0.14 -0.9 409,299 - GFF2978 0.14 +0.1 409,299 - GFF2978 0.14 +1.4 409,595 + -0.6 409,599 + +0.5 409,599 + +1.0 409,599 + +0.6 409,599 + +0.5 409,600 - -1.0 409,600 - -1.3 409,600 - +0.2 409,695 + GFF2979 0.15 +0.6 409,728 + GFF2979 0.20 -1.3 409,729 - GFF2979 0.20 -0.4 409,729 - GFF2979 0.20 +1.7 409,758 + GFF2979 0.24 +0.7 409,758 + GFF2979 0.24 +1.5 409,758 + GFF2979 0.24 +0.6 409,759 - GFF2979 0.25 -0.2 409,759 - GFF2979 0.25 -1.1 409,809 + GFF2979 0.32 -1.3 409,809 + GFF2979 0.32 -0.6 409,810 - GFF2979 0.32 -0.8 409,810 - GFF2979 0.32 +0.7 410,031 + GFF2979 0.66 -0.3 410,217 + +0.0 410,217 + -0.8 410,217 + -0.6 410,218 - -0.2 410,218 - -0.8 410,351 + +1.3 410,399 + -0.7 410,399 + +0.2 410,399 + -0.0 410,399 + -0.6 410,400 - +1.1 410,400 - +0.4
Or see this region's nucleotide sequence