Strain Fitness in Variovorax sp. SCN45 around GFF2756

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2754 and GFF2755 are separated by 210 nucleotidesGFF2755 and GFF2756 overlap by 4 nucleotidesGFF2756 and GFF2757 are separated by 36 nucleotides GFF2754 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 187,361 to 187,639 GFF2754 GFF2755 - Ribosyl nicotinamide transporter, PnuC-like, at 187,850 to 188,395 GFF2755 GFF2756 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 188,392 to 189,063 GFF2756 GFF2757 - hypothetical protein, at 189,100 to 190,071 GFF2757 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 187.623 kb on + strandat 187.624 kb on - strandat 187.637 kb on + strandat 187.637 kb on + strandat 187.637 kb on + strandat 187.638 kb on - strandat 187.638 kb on - strandat 187.638 kb on - strandat 187.638 kb on - strandat 187.638 kb on - strandat 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.931 kb on + strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.932 kb on - strand, within GFF2755at 187.961 kb on + strand, within GFF2755at 187.961 kb on + strand, within GFF2755at 187.962 kb on - strand, within GFF2755at 187.962 kb on - strand, within GFF2755at 187.962 kb on - strand, within GFF2755at 188.318 kb on + strand, within GFF2755at 188.318 kb on + strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.319 kb on - strand, within GFF2755at 188.351 kb on + strandat 188.351 kb on + strandat 188.352 kb on - strandat 188.524 kb on + strand, within GFF2756at 188.524 kb on + strand, within GFF2756at 188.524 kb on + strand, within GFF2756at 188.524 kb on + strand, within GFF2756at 188.525 kb on - strand, within GFF2756at 188.672 kb on - strand, within GFF2756at 188.672 kb on - strand, within GFF2756at 188.672 kb on - strand, within GFF2756at 188.704 kb on + strand, within GFF2756at 188.704 kb on + strand, within GFF2756at 188.704 kb on + strand, within GFF2756at 188.705 kb on - strand, within GFF2756at 188.735 kb on - strand, within GFF2756at 188.735 kb on - strand, within GFF2756at 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.027 kb on + strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.028 kb on - strandat 189.061 kb on + strandat 189.061 kb on + strandat 189.148 kb on - strandat 189.148 kb on - strandat 189.316 kb on + strand, within GFF2757at 189.316 kb on + strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.317 kb on - strand, within GFF2757at 189.607 kb on + strand, within GFF2757at 189.655 kb on + strand, within GFF2757at 189.655 kb on + strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.656 kb on - strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.883 kb on + strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757at 189.884 kb on - strand, within GFF2757

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
187,623 + -0.9
187,624 - +1.4
187,637 + -0.6
187,637 + -0.4
187,637 + +0.1
187,638 - -0.1
187,638 - -1.0
187,638 - -0.1
187,638 - +0.7
187,638 - -0.5
187,931 + GFF2755 0.15 +0.1
187,931 + GFF2755 0.15 +1.0
187,931 + GFF2755 0.15 +0.1
187,931 + GFF2755 0.15 -0.6
187,931 + GFF2755 0.15 -0.1
187,931 + GFF2755 0.15 -0.1
187,931 + GFF2755 0.15 -0.6
187,931 + GFF2755 0.15 -0.5
187,931 + GFF2755 0.15 -0.4
187,931 + GFF2755 0.15 -0.1
187,931 + GFF2755 0.15 -0.3
187,931 + GFF2755 0.15 -0.1
187,931 + GFF2755 0.15 -1.2
187,932 - GFF2755 0.15 -0.2
187,932 - GFF2755 0.15 -0.1
187,932 - GFF2755 0.15 -0.8
187,932 - GFF2755 0.15 -0.1
187,932 - GFF2755 0.15 -1.3
187,932 - GFF2755 0.15 +1.4
187,932 - GFF2755 0.15 -0.5
187,961 + GFF2755 0.20 -0.8
187,961 + GFF2755 0.20 +0.1
187,962 - GFF2755 0.21 +0.1
187,962 - GFF2755 0.21 +0.4
187,962 - GFF2755 0.21 -0.9
188,318 + GFF2755 0.86 +0.8
188,318 + GFF2755 0.86 -0.4
188,319 - GFF2755 0.86 -0.5
188,319 - GFF2755 0.86 +2.0
188,319 - GFF2755 0.86 -0.4
188,319 - GFF2755 0.86 -1.0
188,351 + -0.4
188,351 + -1.6
188,352 - -1.5
188,524 + GFF2756 0.20 +0.4
188,524 + GFF2756 0.20 -1.1
188,524 + GFF2756 0.20 +0.1
188,524 + GFF2756 0.20 -0.8
188,525 - GFF2756 0.20 -0.8
188,672 - GFF2756 0.42 -0.7
188,672 - GFF2756 0.42 -2.4
188,672 - GFF2756 0.42 +0.7
188,704 + GFF2756 0.46 -0.7
188,704 + GFF2756 0.46 -0.9
188,704 + GFF2756 0.46 -0.7
188,705 - GFF2756 0.47 -1.2
188,735 - GFF2756 0.51 -0.3
188,735 - GFF2756 0.51 -0.4
189,027 + +0.5
189,027 + -1.1
189,027 + +4.4
189,027 + +1.5
189,027 + +0.4
189,027 + -0.7
189,027 + -0.1
189,027 + +0.8
189,027 + -0.7
189,027 + +0.1
189,027 + +1.0
189,027 + +0.0
189,027 + -0.8
189,027 + -1.2
189,028 - -1.5
189,028 - +0.1
189,028 - -1.2
189,028 - +0.4
189,028 - -1.3
189,028 - -0.5
189,028 - +0.3
189,028 - -0.9
189,028 - +3.0
189,028 - +0.2
189,028 - -0.2
189,028 - -0.6
189,028 - -0.1
189,028 - -0.7
189,028 - -0.8
189,028 - -0.6
189,028 - +0.2
189,028 - -0.8
189,028 - -0.2
189,061 + -1.5
189,061 + -0.2
189,148 - -0.1
189,148 - -1.3
189,316 + GFF2757 0.22 +0.3
189,316 + GFF2757 0.22 -1.0
189,317 - GFF2757 0.22 +0.1
189,317 - GFF2757 0.22 -0.6
189,317 - GFF2757 0.22 -0.3
189,317 - GFF2757 0.22 +0.4
189,317 - GFF2757 0.22 +2.0
189,607 + GFF2757 0.52 +0.2
189,655 + GFF2757 0.57 -1.0
189,655 + GFF2757 0.57 -0.0
189,656 - GFF2757 0.57 +0.6
189,656 - GFF2757 0.57 -1.7
189,656 - GFF2757 0.57 +0.4
189,656 - GFF2757 0.57 -0.3
189,656 - GFF2757 0.57 -0.4
189,883 + GFF2757 0.81 -0.4
189,883 + GFF2757 0.81 -0.7
189,883 + GFF2757 0.81 -0.6
189,883 + GFF2757 0.81 +0.4
189,884 - GFF2757 0.81 +0.4
189,884 - GFF2757 0.81 -0.5
189,884 - GFF2757 0.81 -0.3
189,884 - GFF2757 0.81 -0.4
189,884 - GFF2757 0.81 -1.8
189,884 - GFF2757 0.81 -1.2
189,884 - GFF2757 0.81 +0.7
189,884 - GFF2757 0.81 -0.1

Or see this region's nucleotide sequence