Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2625 and GFF2626 are separated by 91 nucleotides GFF2626 and GFF2627 overlap by 1 nucleotides
GFF2625 - hypothetical protein, at 36,952 to 39,132
GFF2625
GFF2626 - major facilitator superfamily MFS_1, at 39,224 to 40,417
GFF2626
GFF2627 - Chorismate synthase (EC 4.2.3.5), at 40,417 to 41,526
GFF2627
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1
2 at 38.409 kb on - strand, within GFF2625 at 38.409 kb on - strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.486 kb on + strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.487 kb on - strand, within GFF2625 at 38.543 kb on + strand, within GFF2625 at 38.543 kb on + strand, within GFF2625 at 38.544 kb on - strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.588 kb on + strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.589 kb on - strand, within GFF2625 at 38.805 kb on - strand, within GFF2625 at 38.805 kb on - strand, within GFF2625 at 38.805 kb on - strand, within GFF2625 at 39.194 kb on + strand at 39.194 kb on + strand at 39.194 kb on + strand at 39.195 kb on - strand at 39.195 kb on - strand at 39.195 kb on - strand at 39.387 kb on + strand, within GFF2626 at 39.697 kb on - strand, within GFF2626 at 39.714 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.732 kb on + strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 39.733 kb on - strand, within GFF2626 at 40.144 kb on - strand, within GFF2626 at 40.225 kb on - strand, within GFF2626 at 40.317 kb on + strand at 40.318 kb on - strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.347 kb on + strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.348 kb on - strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.418 kb on + strand at 40.419 kb on - strand at 40.419 kb on - strand at 40.445 kb on - strand at 40.836 kb on - strand, within GFF2627 at 40.862 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.955 kb on + strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 40.956 kb on - strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.081 kb on + strand, within GFF2627 at 41.196 kb on - strand, within GFF2627 at 41.243 kb on + strand, within GFF2627 at 41.244 kb on - strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.312 kb on + strand, within GFF2627 at 41.313 kb on - strand, within GFF2627 at 41.313 kb on - strand, within GFF2627
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 38,409 - GFF2625 0.67 +0.6 38,409 - GFF2625 0.67 +0.1 38,486 + GFF2625 0.70 +0.7 38,486 + GFF2625 0.70 -0.2 38,486 + GFF2625 0.70 -0.7 38,486 + GFF2625 0.70 -0.4 38,487 - GFF2625 0.70 -0.0 38,487 - GFF2625 0.70 -1.6 38,487 - GFF2625 0.70 -0.8 38,487 - GFF2625 0.70 -0.3 38,487 - GFF2625 0.70 -0.2 38,487 - GFF2625 0.70 -0.1 38,487 - GFF2625 0.70 -0.3 38,543 + GFF2625 0.73 +2.0 38,543 + GFF2625 0.73 +0.2 38,544 - GFF2625 0.73 +1.7 38,588 + GFF2625 0.75 -0.5 38,588 + GFF2625 0.75 -0.7 38,588 + GFF2625 0.75 +0.3 38,588 + GFF2625 0.75 +0.1 38,588 + GFF2625 0.75 -1.4 38,589 - GFF2625 0.75 +0.3 38,589 - GFF2625 0.75 +0.0 38,589 - GFF2625 0.75 +0.7 38,589 - GFF2625 0.75 +0.0 38,805 - GFF2625 0.85 +1.0 38,805 - GFF2625 0.85 +0.2 38,805 - GFF2625 0.85 +0.2 39,194 + +0.9 39,194 + -0.1 39,194 + -0.0 39,195 - -0.3 39,195 - -0.4 39,195 - -0.4 39,387 + GFF2626 0.14 +1.0 39,697 - GFF2626 0.40 -0.1 39,714 + GFF2626 0.41 +1.8 39,732 + GFF2626 0.43 +1.0 39,732 + GFF2626 0.43 -0.3 39,732 + GFF2626 0.43 +1.3 39,733 - GFF2626 0.43 -0.8 39,733 - GFF2626 0.43 -0.2 39,733 - GFF2626 0.43 +0.7 40,144 - GFF2626 0.77 +1.8 40,225 - GFF2626 0.84 -0.7 40,317 + -0.3 40,318 - -1.2 40,347 + +0.2 40,347 + -0.8 40,347 + +0.1 40,348 - -0.1 40,348 - -0.5 40,348 - +2.0 40,418 + +0.2 40,418 + +0.4 40,418 + +0.9 40,419 - -0.3 40,419 - -0.1 40,445 - +0.6 40,836 - GFF2627 0.38 -0.7 40,862 + GFF2627 0.40 +0.3 40,955 + GFF2627 0.48 -0.1 40,955 + GFF2627 0.48 +0.1 40,956 - GFF2627 0.49 +0.3 40,956 - GFF2627 0.49 +1.0 41,081 + GFF2627 0.60 +0.2 41,081 + GFF2627 0.60 -1.1 41,196 - GFF2627 0.70 +1.4 41,243 + GFF2627 0.74 -0.6 41,244 - GFF2627 0.75 +0.2 41,312 + GFF2627 0.81 +1.0 41,312 + GFF2627 0.81 -0.8 41,313 - GFF2627 0.81 -1.3 41,313 - GFF2627 0.81 +0.2
Or see this region's nucleotide sequence