Strain Fitness in Variovorax sp. SCN45 around GFF256

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF254 and GFF255 are separated by 40 nucleotidesGFF255 and GFF256 are separated by 65 nucleotidesGFF256 and GFF257 are separated by 16 nucleotides GFF254 - N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2, at 285,759 to 286,979 GFF254 GFF255 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 287,020 to 287,853 GFF255 GFF256 - Twitching motility protein PilT, at 287,919 to 289,067 GFF256 GFF257 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 289,084 to 290,265 GFF257 Position (kb) 287 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2 3at 287.423 kb on - strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.644 kb on + strand, within GFF255at 287.693 kb on - strand, within GFF255at 287.767 kb on + strand, within GFF255at 287.776 kb on + strandat 287.776 kb on + strandat 287.777 kb on - strandat 287.972 kb on + strandat 287.972 kb on + strandat 287.972 kb on + strandat 287.973 kb on - strandat 287.973 kb on - strandat 287.973 kb on - strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.976 kb on + strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 287.977 kb on - strandat 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.162 kb on + strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.163 kb on - strand, within GFF256at 288.168 kb on - strand, within GFF256at 288.168 kb on - strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.195 kb on + strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.196 kb on - strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.213 kb on + strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.214 kb on - strand, within GFF256at 288.357 kb on + strand, within GFF256at 288.357 kb on + strand, within GFF256at 288.409 kb on - strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.417 kb on + strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.418 kb on - strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.570 kb on + strand, within GFF256at 288.571 kb on - strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.621 kb on + strand, within GFF256at 288.622 kb on - strand, within GFF256at 288.622 kb on - strand, within GFF256at 288.651 kb on + strand, within GFF256at 288.651 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.688 kb on + strand, within GFF256at 288.689 kb on - strand, within GFF256at 288.689 kb on - strand, within GFF256at 288.689 kb on - strand, within GFF256at 289.065 kb on + strandat 289.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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287,423 - GFF255 0.48 +2.1
287,644 + GFF255 0.75 -0.9
287,644 + GFF255 0.75 -0.5
287,644 + GFF255 0.75 -1.8
287,644 + GFF255 0.75 -0.9
287,644 + GFF255 0.75 -0.7
287,693 - GFF255 0.81 -0.2
287,767 + GFF255 0.90 +0.5
287,776 + +3.7
287,776 + -0.2
287,777 - -0.9
287,972 + -0.1
287,972 + -0.9
287,972 + -0.4
287,973 - -0.3
287,973 - +0.8
287,973 - -0.1
287,976 + -1.4
287,976 + +0.5
287,976 + -0.0
287,976 + -0.9
287,976 + -1.4
287,976 + -1.3
287,976 + -0.5
287,976 + -1.5
287,976 + +1.1
287,976 + +3.1
287,976 + +0.9
287,977 - +0.6
287,977 - -0.5
287,977 - -0.5
287,977 - -0.9
287,977 - -0.7
287,977 - -0.1
287,977 - -0.1
287,977 - +0.0
287,977 - -0.7
287,977 - -0.9
287,977 - -0.6
287,977 - +1.5
287,977 - -0.1
287,977 - -0.9
287,977 - -0.6
287,977 - -0.3
287,977 - -0.7
287,977 - -0.8
287,977 - +0.2
287,977 - -1.2
287,977 - -0.8
288,162 + GFF256 0.21 +2.1
288,162 + GFF256 0.21 -0.2
288,162 + GFF256 0.21 +0.5
288,162 + GFF256 0.21 -1.4
288,162 + GFF256 0.21 +1.2
288,163 - GFF256 0.21 -0.1
288,163 - GFF256 0.21 -0.5
288,163 - GFF256 0.21 -0.5
288,163 - GFF256 0.21 -0.1
288,163 - GFF256 0.21 -1.0
288,163 - GFF256 0.21 +0.5
288,163 - GFF256 0.21 -2.4
288,163 - GFF256 0.21 -0.0
288,168 - GFF256 0.22 +0.5
288,168 - GFF256 0.22 +1.1
288,195 + GFF256 0.24 -0.9
288,195 + GFF256 0.24 +0.1
288,195 + GFF256 0.24 +0.4
288,195 + GFF256 0.24 +0.9
288,195 + GFF256 0.24 +0.9
288,195 + GFF256 0.24 -1.0
288,195 + GFF256 0.24 -1.0
288,196 - GFF256 0.24 +1.1
288,196 - GFF256 0.24 -0.3
288,196 - GFF256 0.24 -0.3
288,196 - GFF256 0.24 -0.6
288,213 + GFF256 0.26 -0.0
288,213 + GFF256 0.26 -0.1
288,213 + GFF256 0.26 +0.8
288,213 + GFF256 0.26 +2.1
288,214 - GFF256 0.26 -0.7
288,214 - GFF256 0.26 -1.0
288,214 - GFF256 0.26 -0.7
288,214 - GFF256 0.26 -0.3
288,214 - GFF256 0.26 -2.0
288,357 + GFF256 0.38 +1.1
288,357 + GFF256 0.38 -0.8
288,409 - GFF256 0.43 -0.2
288,417 + GFF256 0.43 -0.2
288,417 + GFF256 0.43 -0.6
288,417 + GFF256 0.43 -2.6
288,417 + GFF256 0.43 -1.1
288,417 + GFF256 0.43 -0.4
288,418 - GFF256 0.43 -0.4
288,418 - GFF256 0.43 -0.7
288,418 - GFF256 0.43 -0.7
288,418 - GFF256 0.43 +0.1
288,418 - GFF256 0.43 -1.2
288,418 - GFF256 0.43 -0.1
288,418 - GFF256 0.43 +0.3
288,418 - GFF256 0.43 -0.2
288,418 - GFF256 0.43 -0.3
288,418 - GFF256 0.43 -0.5
288,418 - GFF256 0.43 -1.2
288,418 - GFF256 0.43 +1.4
288,570 + GFF256 0.57 -0.9
288,570 + GFF256 0.57 +0.2
288,570 + GFF256 0.57 +0.0
288,570 + GFF256 0.57 -0.8
288,571 - GFF256 0.57 +1.8
288,621 + GFF256 0.61 +0.2
288,621 + GFF256 0.61 +0.4
288,621 + GFF256 0.61 -1.1
288,621 + GFF256 0.61 -0.4
288,622 - GFF256 0.61 -0.4
288,622 - GFF256 0.61 -0.1
288,651 + GFF256 0.64 +1.1
288,651 + GFF256 0.64 -0.9
288,688 + GFF256 0.67 -0.6
288,688 + GFF256 0.67 -0.4
288,688 + GFF256 0.67 -0.2
288,688 + GFF256 0.67 -0.2
288,689 - GFF256 0.67 -0.5
288,689 - GFF256 0.67 -2.1
288,689 - GFF256 0.67 -0.0
289,065 + -0.8
289,065 + -0.2

Or see this region's nucleotide sequence