Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2488 and GFF2489 are separated by 127 nucleotides GFF2489 and GFF2490 are separated by 7 nucleotides GFF2490 and GFF2491 are separated by 177 nucleotides
GFF2488 - Two-component transcriptional response regulator, LuxR family, at 547,053 to 548,093
GFF2488
GFF2489 - hypothetical protein, at 548,221 to 548,880
GFF2489
GFF2490 - Transcriptional regulator, LysR family, at 548,888 to 549,808
GFF2490
GFF2491 - Threonine-synthase-like protein 3, at 549,986 to 551,134
GFF2491
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 547.914 kb on + strand, within GFF2488 at 547.914 kb on + strand, within GFF2488 at 547.915 kb on - strand, within GFF2488 at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.899 kb on - strand at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.057 kb on + strand, within GFF2490 at 549.058 kb on - strand, within GFF2490 at 549.132 kb on + strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.833 kb on + strand at 549.847 kb on + strand at 549.867 kb on + strand at 549.867 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 550.064 kb on + strand at 550.139 kb on + strand, within GFF2491 at 550.139 kb on + strand, within GFF2491 at 550.139 kb on + strand, within GFF2491 at 550.139 kb on + strand, within GFF2491 at 550.140 kb on - strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.179 kb on - strand, within GFF2491 at 550.406 kb on + strand, within GFF2491 at 550.406 kb on + strand, within GFF2491 at 550.446 kb on - strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.503 kb on - strand, within GFF2491 at 550.556 kb on + strand, within GFF2491 at 550.583 kb on + strand, within GFF2491 at 550.583 kb on + strand, within GFF2491 at 550.583 kb on + strand, within GFF2491 at 550.584 kb on - strand, within GFF2491 at 550.584 kb on - strand, within GFF2491 at 550.584 kb on - strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.628 kb on + strand, within GFF2491 at 550.628 kb on + strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.721 kb on + strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 547,914 + GFF2488 0.83 -0.2 547,914 + GFF2488 0.83 -0.1 547,915 - GFF2488 0.83 -0.3 548,004 + -0.4 548,004 + +0.3 548,004 + -0.3 548,004 + -0.2 548,004 + -0.3 548,146 + -0.7 548,146 + -0.5 548,146 + -0.3 548,146 + -0.5 548,146 + -0.5 548,147 - +0.2 548,147 - -0.7 548,147 - -0.3 548,147 - -0.6 548,147 - -1.1 548,147 - -1.0 548,323 + GFF2489 0.15 -0.1 548,323 + GFF2489 0.15 -1.0 548,323 + GFF2489 0.15 -1.4 548,323 + GFF2489 0.15 -0.5 548,323 + GFF2489 0.15 -0.0 548,324 - GFF2489 0.16 -0.3 548,324 - GFF2489 0.16 -0.7 548,899 - -0.0 549,012 + GFF2490 0.13 +1.1 549,012 + GFF2490 0.13 +0.2 549,012 + GFF2490 0.13 -0.1 549,012 + GFF2490 0.13 +1.4 549,012 + GFF2490 0.13 +0.8 549,013 - GFF2490 0.14 +1.8 549,013 - GFF2490 0.14 +1.8 549,013 - GFF2490 0.14 +0.7 549,013 - GFF2490 0.14 +0.2 549,057 + GFF2490 0.18 -0.6 549,058 - GFF2490 0.18 -0.6 549,132 + GFF2490 0.26 -0.2 549,133 - GFF2490 0.27 -0.4 549,133 - GFF2490 0.27 +0.7 549,133 - GFF2490 0.27 +0.0 549,133 - GFF2490 0.27 +0.7 549,133 - GFF2490 0.27 +0.3 549,508 - GFF2490 0.67 -0.9 549,508 - GFF2490 0.67 +0.9 549,508 - GFF2490 0.67 -0.9 549,833 + -0.3 549,847 + -0.3 549,867 + -0.6 549,867 + -0.2 549,885 + -0.3 549,885 + +1.3 549,885 + -0.7 549,885 + +0.2 549,885 + -1.0 549,885 + +1.5 549,886 - +0.1 549,886 - +0.4 549,886 - -0.4 549,886 - -0.3 549,886 - -0.7 549,886 - -1.7 549,886 - +0.1 549,886 - -1.1 549,886 - -0.3 549,886 - -0.0 550,064 + -2.3 550,139 + GFF2491 0.13 -1.1 550,139 + GFF2491 0.13 -0.2 550,139 + GFF2491 0.13 -0.1 550,139 + GFF2491 0.13 +0.0 550,140 - GFF2491 0.13 -0.4 550,178 + GFF2491 0.17 +1.6 550,178 + GFF2491 0.17 +1.2 550,178 + GFF2491 0.17 +0.3 550,178 + GFF2491 0.17 -0.3 550,179 - GFF2491 0.17 +1.6 550,406 + GFF2491 0.37 -0.6 550,406 + GFF2491 0.37 +0.5 550,446 - GFF2491 0.40 +0.6 550,466 + GFF2491 0.42 +0.2 550,466 + GFF2491 0.42 -0.6 550,466 + GFF2491 0.42 -0.5 550,466 + GFF2491 0.42 +0.3 550,467 - GFF2491 0.42 -0.6 550,467 - GFF2491 0.42 -0.6 550,467 - GFF2491 0.42 -0.6 550,467 - GFF2491 0.42 -1.1 550,467 - GFF2491 0.42 -0.6 550,467 - GFF2491 0.42 -1.1 550,503 - GFF2491 0.45 +1.5 550,556 + GFF2491 0.50 -0.3 550,583 + GFF2491 0.52 -2.0 550,583 + GFF2491 0.52 +0.0 550,583 + GFF2491 0.52 +0.3 550,584 - GFF2491 0.52 -0.8 550,584 - GFF2491 0.52 -0.4 550,584 - GFF2491 0.52 +0.1 550,620 + GFF2491 0.55 -1.4 550,620 + GFF2491 0.55 -0.1 550,620 + GFF2491 0.55 -0.2 550,620 + GFF2491 0.55 -0.5 550,620 + GFF2491 0.55 -1.1 550,620 + GFF2491 0.55 +0.3 550,621 - GFF2491 0.55 +3.7 550,621 - GFF2491 0.55 +0.7 550,621 - GFF2491 0.55 -0.0 550,621 - GFF2491 0.55 -0.1 550,621 - GFF2491 0.55 -0.1 550,621 - GFF2491 0.55 -0.5 550,628 + GFF2491 0.56 -0.1 550,628 + GFF2491 0.56 -0.6 550,629 - GFF2491 0.56 +0.0 550,629 - GFF2491 0.56 -0.3 550,629 - GFF2491 0.56 -0.3 550,629 - GFF2491 0.56 +0.2 550,629 - GFF2491 0.56 -0.1 550,629 - GFF2491 0.56 -0.5 550,721 + GFF2491 0.64 +0.6 550,722 - GFF2491 0.64 -0.8 550,722 - GFF2491 0.64 +0.1 550,722 - GFF2491 0.64 -0.0 550,722 - GFF2491 0.64 +0.6 550,722 - GFF2491 0.64 -0.3
Or see this region's nucleotide sequence