Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2446 and GFF2447 are separated by 34 nucleotides GFF2447 and GFF2448 are separated by 131 nucleotides
GFF2446 - FIG00956403: hypothetical protein, at 499,014 to 501,233
GFF2446
GFF2447 - beta-lactamase-like protein, at 501,268 to 502,593
GFF2447
GFF2448 - Acyl-CoA dehydrogenase, at 502,725 to 503,942
GFF2448
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 500.389 kb on + strand, within GFF2446 at 500.431 kb on + strand, within GFF2446 at 500.431 kb on + strand, within GFF2446 at 500.432 kb on - strand, within GFF2446 at 500.432 kb on - strand, within GFF2446 at 500.483 kb on - strand, within GFF2446 at 500.483 kb on - strand, within GFF2446 at 500.483 kb on - strand, within GFF2446 at 500.665 kb on + strand, within GFF2446 at 500.665 kb on + strand, within GFF2446 at 500.665 kb on + strand, within GFF2446 at 500.665 kb on + strand, within GFF2446 at 500.665 kb on + strand, within GFF2446 at 500.665 kb on + strand, within GFF2446 at 500.666 kb on - strand, within GFF2446 at 500.666 kb on - strand, within GFF2446 at 500.666 kb on - strand, within GFF2446 at 500.666 kb on - strand, within GFF2446 at 500.755 kb on + strand, within GFF2446 at 500.848 kb on + strand, within GFF2446 at 500.848 kb on + strand, within GFF2446 at 500.849 kb on - strand, within GFF2446 at 500.888 kb on - strand, within GFF2446 at 501.641 kb on + strand, within GFF2447 at 501.641 kb on + strand, within GFF2447 at 501.641 kb on + strand, within GFF2447 at 501.641 kb on + strand, within GFF2447 at 501.641 kb on + strand, within GFF2447 at 501.641 kb on + strand, within GFF2447 at 501.642 kb on - strand, within GFF2447 at 501.735 kb on - strand, within GFF2447 at 502.113 kb on - strand, within GFF2447 at 502.316 kb on + strand, within GFF2447 at 502.317 kb on - strand, within GFF2447 at 502.317 kb on - strand, within GFF2447 at 502.319 kb on + strand, within GFF2447 at 502.319 kb on + strand, within GFF2447 at 502.319 kb on + strand, within GFF2447 at 502.320 kb on - strand, within GFF2447 at 502.693 kb on - strand at 502.857 kb on + strand, within GFF2448 at 502.857 kb on + strand, within GFF2448 at 503.018 kb on - strand, within GFF2448 at 503.211 kb on + strand, within GFF2448 at 503.211 kb on + strand, within GFF2448 at 503.235 kb on + strand, within GFF2448 at 503.235 kb on + strand, within GFF2448 at 503.235 kb on + strand, within GFF2448 at 503.236 kb on - strand, within GFF2448 at 503.236 kb on - strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.394 kb on + strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.395 kb on - strand, within GFF2448 at 503.395 kb on - strand, within GFF2448
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 500,389 + GFF2446 0.62 -0.4 500,431 + GFF2446 0.64 -0.7 500,431 + GFF2446 0.64 +0.6 500,432 - GFF2446 0.64 +0.3 500,432 - GFF2446 0.64 +0.3 500,483 - GFF2446 0.66 -0.2 500,483 - GFF2446 0.66 +0.3 500,483 - GFF2446 0.66 +0.4 500,665 + GFF2446 0.74 +1.1 500,665 + GFF2446 0.74 -0.5 500,665 + GFF2446 0.74 -0.5 500,665 + GFF2446 0.74 -0.1 500,665 + GFF2446 0.74 +0.1 500,665 + GFF2446 0.74 -0.2 500,666 - GFF2446 0.74 +1.1 500,666 - GFF2446 0.74 -0.3 500,666 - GFF2446 0.74 +4.0 500,666 - GFF2446 0.74 -0.8 500,755 + GFF2446 0.78 +2.1 500,848 + GFF2446 0.83 +0.3 500,848 + GFF2446 0.83 +0.4 500,849 - GFF2446 0.83 -0.3 500,888 - GFF2446 0.84 -0.6 501,641 + GFF2447 0.28 +0.1 501,641 + GFF2447 0.28 +0.5 501,641 + GFF2447 0.28 -0.2 501,641 + GFF2447 0.28 -0.5 501,641 + GFF2447 0.28 +0.5 501,641 + GFF2447 0.28 -0.6 501,642 - GFF2447 0.28 +0.3 501,735 - GFF2447 0.35 +1.1 502,113 - GFF2447 0.64 +0.1 502,316 + GFF2447 0.79 -0.5 502,317 - GFF2447 0.79 +0.6 502,317 - GFF2447 0.79 -0.1 502,319 + GFF2447 0.79 +1.2 502,319 + GFF2447 0.79 +0.1 502,319 + GFF2447 0.79 +0.8 502,320 - GFF2447 0.79 +0.2 502,693 - +0.3 502,857 + GFF2448 0.11 +0.1 502,857 + GFF2448 0.11 +2.1 503,018 - GFF2448 0.24 -0.5 503,211 + GFF2448 0.40 -0.0 503,211 + GFF2448 0.40 +0.7 503,235 + GFF2448 0.42 +2.1 503,235 + GFF2448 0.42 -0.2 503,235 + GFF2448 0.42 -0.3 503,236 - GFF2448 0.42 -0.2 503,236 - GFF2448 0.42 -0.3 503,394 + GFF2448 0.55 -2.1 503,394 + GFF2448 0.55 +0.5 503,394 + GFF2448 0.55 -0.5 503,394 + GFF2448 0.55 -0.4 503,395 - GFF2448 0.55 +0.1 503,395 - GFF2448 0.55 +0.5 503,395 - GFF2448 0.55 +0.0 503,395 - GFF2448 0.55 +0.4
Or see this region's nucleotide sequence