Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2400 and GFF2401 overlap by 4 nucleotides GFF2401 and GFF2402 are separated by 129 nucleotides GFF2402 and GFF2403 are separated by 54 nucleotides GFF2403 and GFF2404 are separated by 121 nucleotides
GFF2400 - no description, at 453,543 to 454,592
GFF2400
GFF2401 - hypothetical protein, at 454,589 to 455,161
GFF2401
GFF2402 - hypothetical protein, at 455,291 to 455,752
GFF2402
GFF2403 - CHAP domain containing protein, at 455,807 to 456,418
GFF2403
GFF2404 - Hypothetical protein with Rieske (2Fe-2S) region, at 456,540 to 457,622
GFF2404
Position (kb) 455
456 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 455.022 kb on + strand, within GFF2401 at 455.023 kb on - strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.034 kb on + strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.035 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.058 kb on - strand, within GFF2401 at 455.278 kb on + strand at 455.341 kb on - strand, within GFF2402 at 455.366 kb on + strand, within GFF2402 at 455.367 kb on - strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.534 kb on + strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.535 kb on - strand, within GFF2402 at 455.564 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.571 kb on + strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.572 kb on - strand, within GFF2402 at 455.667 kb on + strand, within GFF2402 at 455.835 kb on + strand at 455.836 kb on - strand at 455.966 kb on + strand, within GFF2403 at 455.966 kb on + strand, within GFF2403 at 455.966 kb on + strand, within GFF2403 at 455.967 kb on - strand, within GFF2403 at 456.017 kb on + strand, within GFF2403 at 456.017 kb on + strand, within GFF2403 at 456.035 kb on + strand, within GFF2403 at 456.035 kb on + strand, within GFF2403 at 456.036 kb on - strand, within GFF2403 at 456.036 kb on - strand, within GFF2403 at 456.062 kb on + strand, within GFF2403 at 456.065 kb on + strand, within GFF2403 at 456.065 kb on + strand, within GFF2403 at 456.119 kb on + strand, within GFF2403 at 456.120 kb on - strand, within GFF2403 at 456.120 kb on - strand, within GFF2403 at 456.401 kb on - strand at 456.445 kb on + strand at 456.539 kb on + strand at 456.744 kb on + strand, within GFF2404 at 456.745 kb on - strand, within GFF2404 at 456.745 kb on - strand, within GFF2404
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 455,022 + GFF2401 0.76 +0.1 455,023 - GFF2401 0.76 -0.2 455,034 + GFF2401 0.78 +3.1 455,034 + GFF2401 0.78 +2.7 455,034 + GFF2401 0.78 +0.9 455,035 - GFF2401 0.78 -1.2 455,035 - GFF2401 0.78 +0.3 455,035 - GFF2401 0.78 -2.1 455,058 - GFF2401 0.82 -0.3 455,058 - GFF2401 0.82 +0.1 455,278 + -0.2 455,341 - GFF2402 0.11 +1.1 455,366 + GFF2402 0.16 -0.2 455,367 - GFF2402 0.16 +0.4 455,534 + GFF2402 0.53 -0.7 455,534 + GFF2402 0.53 -1.0 455,534 + GFF2402 0.53 +0.3 455,534 + GFF2402 0.53 +0.5 455,534 + GFF2402 0.53 -0.6 455,535 - GFF2402 0.53 +0.5 455,535 - GFF2402 0.53 -0.2 455,535 - GFF2402 0.53 +0.1 455,535 - GFF2402 0.53 +0.2 455,535 - GFF2402 0.53 +0.3 455,535 - GFF2402 0.53 -0.3 455,535 - GFF2402 0.53 +0.3 455,564 + GFF2402 0.59 +1.0 455,571 + GFF2402 0.61 +0.6 455,571 + GFF2402 0.61 -1.2 455,571 + GFF2402 0.61 -1.2 455,572 - GFF2402 0.61 +1.7 455,572 - GFF2402 0.61 +1.6 455,572 - GFF2402 0.61 -0.1 455,667 + GFF2402 0.81 -0.4 455,835 + +0.5 455,836 - +2.7 455,966 + GFF2403 0.26 -0.2 455,966 + GFF2403 0.26 +2.8 455,966 + GFF2403 0.26 -0.6 455,967 - GFF2403 0.26 -0.3 456,017 + GFF2403 0.34 +1.6 456,017 + GFF2403 0.34 -0.4 456,035 + GFF2403 0.37 +0.4 456,035 + GFF2403 0.37 -0.2 456,036 - GFF2403 0.37 -0.4 456,036 - GFF2403 0.37 -0.3 456,062 + GFF2403 0.42 +0.3 456,065 + GFF2403 0.42 -0.5 456,065 + GFF2403 0.42 +0.8 456,119 + GFF2403 0.51 +0.2 456,120 - GFF2403 0.51 -0.3 456,120 - GFF2403 0.51 -1.1 456,401 - +2.1 456,445 + -0.7 456,539 + +0.4 456,744 + GFF2404 0.19 -0.3 456,745 - GFF2404 0.19 +0.5 456,745 - GFF2404 0.19 +0.6
Or see this region's nucleotide sequence