Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2234 and GFF2235 are separated by 7 nucleotides GFF2235 and GFF2236 overlap by 4 nucleotides GFF2236 and GFF2237 are separated by 70 nucleotides GFF2237 and GFF2238 are separated by 122 nucleotides
GFF2234 - no description, at 295,895 to 296,095
GFF2234
GFF2235 - hypothetical protein, at 296,103 to 296,834
GFF2235
GFF2236 - hypothetical protein, at 296,831 to 297,247
GFF2236
GFF2237 - Intracellular protease, at 297,318 to 297,896
GFF2237
GFF2238 - hypothetical protein, at 298,019 to 298,480
GFF2238
Position (kb) 296
297
298 Strain fitness (log2 ratio) -1
0
1
2 at 296.101 kb on - strand at 296.101 kb on - strand at 296.158 kb on - strand at 296.251 kb on - strand, within GFF2235 at 296.251 kb on - strand, within GFF2235 at 296.251 kb on - strand, within GFF2235 at 296.543 kb on + strand, within GFF2235 at 296.772 kb on + strand at 296.773 kb on - strand at 296.773 kb on - strand at 297.075 kb on + strand, within GFF2236 at 297.210 kb on + strand at 297.210 kb on + strand at 297.295 kb on - strand at 297.442 kb on + strand, within GFF2237 at 297.442 kb on + strand, within GFF2237 at 297.442 kb on + strand, within GFF2237 at 297.443 kb on - strand, within GFF2237 at 297.443 kb on - strand, within GFF2237 at 297.620 kb on - strand, within GFF2237 at 297.659 kb on - strand, within GFF2237 at 297.863 kb on - strand at 297.955 kb on + strand at 297.956 kb on - strand at 298.072 kb on - strand, within GFF2238 at 298.204 kb on - strand, within GFF2238 at 298.243 kb on - strand, within GFF2238 at 298.243 kb on - strand, within GFF2238
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 296,101 - +0.1 296,101 - +0.7 296,158 - +0.2 296,251 - GFF2235 0.20 +0.4 296,251 - GFF2235 0.20 -0.5 296,251 - GFF2235 0.20 -0.8 296,543 + GFF2235 0.60 +0.9 296,772 + +0.2 296,773 - +2.1 296,773 - -0.1 297,075 + GFF2236 0.59 +0.6 297,210 + -1.0 297,210 + +0.2 297,295 - -0.4 297,442 + GFF2237 0.21 -0.2 297,442 + GFF2237 0.21 -0.1 297,442 + GFF2237 0.21 -0.0 297,443 - GFF2237 0.22 +0.7 297,443 - GFF2237 0.22 -0.9 297,620 - GFF2237 0.52 +0.2 297,659 - GFF2237 0.59 -0.6 297,863 - +1.3 297,955 + +0.6 297,956 - +0.5 298,072 - GFF2238 0.11 -0.1 298,204 - GFF2238 0.40 -1.4 298,243 - GFF2238 0.48 -0.3 298,243 - GFF2238 0.48 +0.0
Or see this region's nucleotide sequence