Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2201 and GFF2202 are separated by 61 nucleotides GFF2202 and GFF2203 overlap by 4 nucleotides GFF2203 and GFF2204 are separated by 34 nucleotides GFF2204 and GFF2205 are separated by 146 nucleotides
GFF2201 - hypothetical protein, at 263,129 to 265,156
GFF2201
GFF2202 - hypothetical protein, at 265,218 to 265,712
GFF2202
GFF2203 - no description, at 265,709 to 266,182
GFF2203
GFF2204 - no description, at 266,217 to 266,450
GFF2204
GFF2205 - hypothetical protein, at 266,597 to 267,580
GFF2205
Position (kb) 265
266 Strain fitness (log2 ratio) -1
0
1 at 264.368 kb on - strand, within GFF2201 at 264.425 kb on + strand, within GFF2201 at 264.426 kb on - strand, within GFF2201 at 264.593 kb on + strand, within GFF2201 at 264.594 kb on - strand, within GFF2201 at 264.594 kb on - strand, within GFF2201 at 264.594 kb on - strand, within GFF2201 at 264.610 kb on + strand, within GFF2201 at 264.610 kb on + strand, within GFF2201 at 264.611 kb on - strand, within GFF2201 at 264.611 kb on - strand, within GFF2201 at 264.773 kb on + strand, within GFF2201 at 264.773 kb on + strand, within GFF2201 at 264.774 kb on - strand, within GFF2201 at 264.867 kb on - strand, within GFF2201 at 264.882 kb on + strand, within GFF2201 at 264.883 kb on - strand, within GFF2201 at 264.883 kb on - strand, within GFF2201 at 264.898 kb on + strand, within GFF2201 at 264.898 kb on + strand, within GFF2201 at 265.089 kb on + strand at 265.210 kb on + strand at 265.210 kb on + strand at 265.210 kb on + strand at 265.210 kb on + strand at 265.211 kb on - strand at 265.211 kb on - strand at 265.321 kb on + strand, within GFF2202 at 265.469 kb on - strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.569 kb on + strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.570 kb on - strand, within GFF2202 at 265.573 kb on + strand, within GFF2202 at 265.573 kb on + strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.574 kb on - strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.575 kb on + strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.576 kb on - strand, within GFF2202 at 265.603 kb on + strand, within GFF2202 at 265.790 kb on + strand, within GFF2203 at 265.985 kb on + strand, within GFF2203 at 265.990 kb on + strand, within GFF2203 at 265.999 kb on - strand, within GFF2203 at 266.071 kb on - strand, within GFF2203 at 266.311 kb on + strand, within GFF2204 at 266.311 kb on + strand, within GFF2204 at 266.312 kb on - strand, within GFF2204 at 266.425 kb on + strand, within GFF2204 at 266.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 264,368 - GFF2201 0.61 +0.3 264,425 + GFF2201 0.64 -0.2 264,426 - GFF2201 0.64 -0.2 264,593 + GFF2201 0.72 +0.0 264,594 - GFF2201 0.72 +0.8 264,594 - GFF2201 0.72 -0.7 264,594 - GFF2201 0.72 -1.0 264,610 + GFF2201 0.73 +0.7 264,610 + GFF2201 0.73 +1.2 264,611 - GFF2201 0.73 +0.1 264,611 - GFF2201 0.73 +0.5 264,773 + GFF2201 0.81 -0.5 264,773 + GFF2201 0.81 +0.3 264,774 - GFF2201 0.81 -0.2 264,867 - GFF2201 0.86 -0.2 264,882 + GFF2201 0.86 -0.6 264,883 - GFF2201 0.86 +0.6 264,883 - GFF2201 0.86 -0.4 264,898 + GFF2201 0.87 +1.3 264,898 + GFF2201 0.87 -0.9 265,089 + +0.6 265,210 + -0.3 265,210 + +1.4 265,210 + -0.7 265,210 + +0.5 265,211 - +1.3 265,211 - +0.8 265,321 + GFF2202 0.21 +1.4 265,469 - GFF2202 0.51 +0.8 265,569 + GFF2202 0.71 +0.3 265,569 + GFF2202 0.71 -0.7 265,569 + GFF2202 0.71 -0.5 265,569 + GFF2202 0.71 +0.5 265,569 + GFF2202 0.71 +0.7 265,570 - GFF2202 0.71 +1.3 265,570 - GFF2202 0.71 -0.3 265,570 - GFF2202 0.71 +0.9 265,570 - GFF2202 0.71 -0.2 265,570 - GFF2202 0.71 +0.2 265,570 - GFF2202 0.71 +0.7 265,570 - GFF2202 0.71 +0.2 265,573 + GFF2202 0.72 -0.8 265,573 + GFF2202 0.72 -0.4 265,574 - GFF2202 0.72 +0.4 265,574 - GFF2202 0.72 +1.1 265,574 - GFF2202 0.72 -1.2 265,574 - GFF2202 0.72 -0.9 265,575 + GFF2202 0.72 +0.5 265,575 + GFF2202 0.72 -0.8 265,575 + GFF2202 0.72 +0.5 265,575 + GFF2202 0.72 -0.4 265,575 + GFF2202 0.72 +0.4 265,575 + GFF2202 0.72 -1.0 265,575 + GFF2202 0.72 -0.0 265,576 - GFF2202 0.72 -0.5 265,576 - GFF2202 0.72 -0.2 265,576 - GFF2202 0.72 +0.2 265,576 - GFF2202 0.72 +0.4 265,603 + GFF2202 0.78 +1.5 265,790 + GFF2203 0.17 +0.8 265,985 + GFF2203 0.58 -0.9 265,990 + GFF2203 0.59 -1.2 265,999 - GFF2203 0.61 -0.3 266,071 - GFF2203 0.76 +1.1 266,311 + GFF2204 0.40 -1.2 266,311 + GFF2204 0.40 -0.7 266,312 - GFF2204 0.41 +0.4 266,425 + GFF2204 0.89 +1.1 266,606 - +0.8
Or see this region's nucleotide sequence