Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2167 and GFF2168 are separated by 31 nucleotides GFF2168 and GFF2169 overlap by 4 nucleotides GFF2169 and GFF2170 are separated by 20 nucleotides GFF2170 and GFF2171 are separated by 34 nucleotides
GFF2167 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 220,681 to 221,880
GFF2167
GFF2168 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 221,912 to 222,835
GFF2168
GFF2169 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222,832 to 224,622
GFF2169
GFF2170 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 224,643 to 225,353
GFF2170
GFF2171 - MBL-fold metallohydrolase SPO0683, at 225,388 to 226,356
GFF2171
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 221.879 kb on - strand at 221.879 kb on - strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.966 kb on + strand at 221.967 kb on - strand at 222.200 kb on + strand, within GFF2168 at 222.201 kb on - strand, within GFF2168 at 222.201 kb on - strand, within GFF2168 at 222.201 kb on - strand, within GFF2168 at 222.831 kb on + strand at 222.831 kb on + strand at 222.831 kb on + strand at 222.831 kb on + strand at 222.832 kb on - strand at 222.832 kb on - strand at 222.832 kb on - strand at 222.832 kb on - strand at 222.913 kb on + strand at 222.913 kb on + strand at 222.914 kb on - strand at 222.914 kb on - strand at 222.916 kb on + strand at 222.916 kb on + strand at 222.916 kb on + strand at 222.917 kb on - strand at 222.917 kb on - strand at 222.950 kb on - strand at 222.950 kb on - strand at 222.950 kb on - strand at 223.162 kb on + strand, within GFF2169 at 223.162 kb on + strand, within GFF2169 at 223.162 kb on + strand, within GFF2169 at 223.163 kb on - strand, within GFF2169 at 223.163 kb on - strand, within GFF2169 at 223.163 kb on - strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.439 kb on - strand, within GFF2169 at 223.519 kb on + strand, within GFF2169 at 223.520 kb on - strand, within GFF2169 at 223.520 kb on - strand, within GFF2169 at 223.600 kb on + strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.708 kb on + strand, within GFF2169 at 223.708 kb on + strand, within GFF2169 at 223.709 kb on - strand, within GFF2169 at 223.709 kb on - strand, within GFF2169 at 223.709 kb on - strand, within GFF2169 at 223.861 kb on + strand, within GFF2169 at 224.284 kb on + strand, within GFF2169 at 224.500 kb on + strand at 224.566 kb on + strand at 224.673 kb on + strand at 224.673 kb on + strand at 224.946 kb on + strand, within GFF2170 at 225.259 kb on - strand, within GFF2170 at 225.259 kb on - strand, within GFF2170 at 225.473 kb on - strand at 225.473 kb on - strand at 225.610 kb on + strand, within GFF2171 at 225.610 kb on + strand, within GFF2171 at 225.611 kb on - strand, within GFF2171 at 225.611 kb on - strand, within GFF2171
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 221,879 - -1.0 221,879 - +0.5 221,919 + -0.2 221,919 + -0.7 221,919 + -0.3 221,919 + -1.3 221,919 + -1.5 221,966 + -0.2 221,967 - +0.1 222,200 + GFF2168 0.31 +0.1 222,201 - GFF2168 0.31 +1.6 222,201 - GFF2168 0.31 -0.7 222,201 - GFF2168 0.31 +0.1 222,831 + +1.1 222,831 + +0.1 222,831 + -0.2 222,831 + +1.2 222,832 - -0.3 222,832 - -1.7 222,832 - -0.7 222,832 - -0.7 222,913 + -0.1 222,913 + -0.6 222,914 - +0.1 222,914 - +1.2 222,916 + +0.6 222,916 + -0.2 222,916 + +4.2 222,917 - +0.1 222,917 - -0.7 222,950 - +0.0 222,950 - +0.5 222,950 - -0.2 223,162 + GFF2169 0.18 +0.5 223,162 + GFF2169 0.18 -0.0 223,162 + GFF2169 0.18 +0.0 223,163 - GFF2169 0.18 -1.1 223,163 - GFF2169 0.18 -0.3 223,163 - GFF2169 0.18 +0.3 223,252 + GFF2169 0.23 -0.4 223,252 + GFF2169 0.23 -0.3 223,252 + GFF2169 0.23 +0.4 223,252 + GFF2169 0.23 +1.0 223,252 + GFF2169 0.23 -1.0 223,439 - GFF2169 0.34 -0.2 223,519 + GFF2169 0.38 +0.8 223,520 - GFF2169 0.38 +0.3 223,520 - GFF2169 0.38 +0.7 223,600 + GFF2169 0.43 -0.3 223,601 - GFF2169 0.43 -0.8 223,601 - GFF2169 0.43 -0.1 223,601 - GFF2169 0.43 -1.9 223,601 - GFF2169 0.43 -0.6 223,708 + GFF2169 0.49 -1.3 223,708 + GFF2169 0.49 -0.9 223,709 - GFF2169 0.49 -0.2 223,709 - GFF2169 0.49 -0.3 223,709 - GFF2169 0.49 -0.2 223,861 + GFF2169 0.57 -0.1 224,284 + GFF2169 0.81 +0.5 224,500 + +0.8 224,566 + -1.0 224,673 + -0.3 224,673 + -0.2 224,946 + GFF2170 0.43 -0.2 225,259 - GFF2170 0.87 -0.5 225,259 - GFF2170 0.87 -2.3 225,473 - +0.3 225,473 - -1.2 225,610 + GFF2171 0.23 +0.5 225,610 + GFF2171 0.23 -0.5 225,611 - GFF2171 0.23 -0.2 225,611 - GFF2171 0.23 +0.8
Or see this region's nucleotide sequence