Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1777 and GFF1778 are separated by 26 nucleotides GFF1778 and GFF1779 are separated by 138 nucleotides GFF1779 and GFF1780 are separated by 11 nucleotides
GFF1777 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 438,173 to 439,354
GFF1777
GFF1778 - Transcriptional regulator, HxlR family, at 439,381 to 439,734
GFF1778
GFF1779 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 439,873 to 440,745
GFF1779
GFF1780 - hypothetical protein, at 440,757 to 441,890
GFF1780
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1
2 at 439.084 kb on + strand, within GFF1777 at 439.257 kb on + strand at 439.257 kb on + strand at 439.257 kb on + strand at 439.257 kb on + strand at 439.258 kb on - strand at 439.383 kb on - strand at 439.499 kb on + strand, within GFF1778 at 439.499 kb on + strand, within GFF1778 at 439.499 kb on + strand, within GFF1778 at 439.500 kb on - strand, within GFF1778 at 439.500 kb on - strand, within GFF1778 at 439.715 kb on + strand at 439.716 kb on - strand at 439.716 kb on - strand at 439.759 kb on + strand at 439.763 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.774 kb on + strand at 439.775 kb on - strand at 439.788 kb on + strand at 439.789 kb on - strand at 439.798 kb on + strand at 439.803 kb on + strand at 439.804 kb on - strand at 439.804 kb on - strand at 439.807 kb on + strand at 439.807 kb on + strand at 439.936 kb on + strand at 439.936 kb on + strand at 439.936 kb on + strand at 440.074 kb on + strand, within GFF1779 at 440.075 kb on - strand, within GFF1779 at 440.080 kb on + strand, within GFF1779 at 440.219 kb on - strand, within GFF1779 at 440.410 kb on + strand, within GFF1779 at 440.411 kb on - strand, within GFF1779 at 440.743 kb on + strand at 441.298 kb on + strand, within GFF1780 at 441.319 kb on + strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.320 kb on - strand, within GFF1780 at 441.362 kb on - strand, within GFF1780 at 441.466 kb on + strand, within GFF1780 at 441.467 kb on - strand, within GFF1780
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 439,084 + GFF1777 0.77 -1.0 439,257 + -0.6 439,257 + +0.9 439,257 + +0.4 439,257 + -0.1 439,258 - -1.5 439,383 - -0.9 439,499 + GFF1778 0.33 -1.9 439,499 + GFF1778 0.33 -0.4 439,499 + GFF1778 0.33 -0.6 439,500 - GFF1778 0.34 +0.9 439,500 - GFF1778 0.34 -0.6 439,715 + -0.6 439,716 - -0.2 439,716 - -0.1 439,759 + -0.8 439,763 + -0.3 439,770 + -1.2 439,770 + -0.0 439,770 + +0.6 439,770 + +0.1 439,774 + -0.3 439,775 - -1.1 439,788 + -0.2 439,789 - -0.9 439,798 + -1.3 439,803 + -0.7 439,804 - +1.0 439,804 - +0.0 439,807 + -0.7 439,807 + +0.2 439,936 + -1.2 439,936 + +0.8 439,936 + -1.9 440,074 + GFF1779 0.23 +0.4 440,075 - GFF1779 0.23 +0.2 440,080 + GFF1779 0.24 +1.9 440,219 - GFF1779 0.40 -0.8 440,410 + GFF1779 0.62 -0.1 440,411 - GFF1779 0.62 -0.1 440,743 + -0.9 441,298 + GFF1780 0.48 -0.4 441,319 + GFF1780 0.50 +0.7 441,320 - GFF1780 0.50 -2.0 441,320 - GFF1780 0.50 +0.6 441,320 - GFF1780 0.50 -0.8 441,362 - GFF1780 0.53 +2.5 441,466 + GFF1780 0.63 +0.1 441,467 - GFF1780 0.63 -1.4
Or see this region's nucleotide sequence