Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1733 and GFF1734 are separated by 39 nucleotides GFF1734 and GFF1735 are separated by 1 nucleotides GFF1735 and GFF1736 are separated by 85 nucleotides GFF1736 and GFF1737 are separated by 212 nucleotides
GFF1733 - Cell wall-associated hydrolases (invasion-associated proteins), at 393,612 to 394,115
GFF1733
GFF1734 - no description, at 394,155 to 394,514
GFF1734
GFF1735 - no description, at 394,516 to 394,635
GFF1735
GFF1736 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 394,721 to 396,010
GFF1736
GFF1737 - Carbon starvation protein A, at 396,223 to 398,289
GFF1737
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 393.801 kb on + strand, within GFF1733 at 393.858 kb on + strand, within GFF1733 at 393.858 kb on + strand, within GFF1733 at 393.859 kb on - strand, within GFF1733 at 393.864 kb on + strand, within GFF1733 at 393.865 kb on - strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.002 kb on + strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.003 kb on - strand, within GFF1733 at 394.078 kb on - strand at 394.078 kb on - strand at 394.435 kb on + strand, within GFF1734 at 394.435 kb on + strand, within GFF1734 at 394.435 kb on + strand, within GFF1734 at 394.489 kb on + strand at 394.666 kb on - strand at 394.724 kb on + strand at 395.304 kb on + strand, within GFF1736 at 395.305 kb on - strand, within GFF1736 at 395.305 kb on - strand, within GFF1736 at 395.421 kb on + strand, within GFF1736 at 395.422 kb on - strand, within GFF1736 at 395.810 kb on + strand, within GFF1736 at 396.042 kb on + strand at 396.042 kb on + strand at 396.043 kb on - strand at 396.043 kb on - strand at 396.043 kb on - strand at 396.043 kb on - strand at 396.073 kb on + strand at 396.073 kb on + strand at 396.355 kb on + strand at 396.355 kb on + strand at 396.355 kb on + strand at 396.355 kb on + strand at 396.355 kb on + strand at 396.356 kb on - strand at 396.356 kb on - strand at 396.368 kb on - strand at 396.373 kb on + strand at 396.373 kb on + strand at 396.376 kb on + strand at 396.376 kb on + strand at 396.376 kb on + strand at 396.376 kb on + strand at 396.376 kb on + strand at 396.377 kb on - strand at 396.461 kb on - strand, within GFF1737 at 396.559 kb on + strand, within GFF1737 at 396.560 kb on - strand, within GFF1737 at 396.847 kb on + strand, within GFF1737 at 396.847 kb on + strand, within GFF1737 at 396.847 kb on + strand, within GFF1737 at 396.848 kb on - strand, within GFF1737 at 396.848 kb on - strand, within GFF1737 at 396.848 kb on - strand, within GFF1737 at 396.856 kb on + strand, within GFF1737 at 396.857 kb on - strand, within GFF1737 at 396.857 kb on - strand, within GFF1737 at 396.857 kb on - strand, within GFF1737 at 397.010 kb on - strand, within GFF1737
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 393,801 + GFF1733 0.38 +0.4 393,858 + GFF1733 0.49 +2.0 393,858 + GFF1733 0.49 +0.4 393,859 - GFF1733 0.49 -0.1 393,864 + GFF1733 0.50 -0.4 393,865 - GFF1733 0.50 -0.6 394,002 + GFF1733 0.77 -0.8 394,002 + GFF1733 0.77 -0.3 394,002 + GFF1733 0.77 -0.7 394,002 + GFF1733 0.77 +0.0 394,002 + GFF1733 0.77 -0.1 394,002 + GFF1733 0.77 -0.5 394,002 + GFF1733 0.77 -0.3 394,002 + GFF1733 0.77 +0.3 394,002 + GFF1733 0.77 +0.6 394,003 - GFF1733 0.78 -1.1 394,003 - GFF1733 0.78 +0.2 394,003 - GFF1733 0.78 -1.1 394,003 - GFF1733 0.78 -0.3 394,003 - GFF1733 0.78 -0.2 394,003 - GFF1733 0.78 +0.2 394,078 - -1.1 394,078 - +0.1 394,435 + GFF1734 0.78 -0.9 394,435 + GFF1734 0.78 +0.5 394,435 + GFF1734 0.78 -1.3 394,489 + +0.1 394,666 - -1.1 394,724 + -0.6 395,304 + GFF1736 0.45 -1.4 395,305 - GFF1736 0.45 -0.6 395,305 - GFF1736 0.45 +0.6 395,421 + GFF1736 0.54 -0.7 395,422 - GFF1736 0.54 +0.4 395,810 + GFF1736 0.84 -1.2 396,042 + -0.4 396,042 + +0.0 396,043 - +0.1 396,043 - -0.1 396,043 - +0.4 396,043 - +0.7 396,073 + -0.7 396,073 + -0.5 396,355 + +1.4 396,355 + -0.5 396,355 + -0.7 396,355 + -0.7 396,355 + +0.8 396,356 - +0.9 396,356 - +3.9 396,368 - -0.1 396,373 + +0.2 396,373 + +0.1 396,376 + -0.3 396,376 + -0.4 396,376 + -0.9 396,376 + +0.2 396,376 + -1.0 396,377 - +0.4 396,461 - GFF1737 0.12 -0.2 396,559 + GFF1737 0.16 -0.2 396,560 - GFF1737 0.16 -1.4 396,847 + GFF1737 0.30 +0.2 396,847 + GFF1737 0.30 -0.3 396,847 + GFF1737 0.30 -0.0 396,848 - GFF1737 0.30 +0.7 396,848 - GFF1737 0.30 +0.8 396,848 - GFF1737 0.30 +0.1 396,856 + GFF1737 0.31 -0.4 396,857 - GFF1737 0.31 +0.4 396,857 - GFF1737 0.31 -1.6 396,857 - GFF1737 0.31 +0.2 397,010 - GFF1737 0.38 +0.7
Or see this region's nucleotide sequence