Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1637 and GFF1638 overlap by 4 nucleotides GFF1638 and GFF1639 overlap by 4 nucleotides
GFF1637 - Polyketide synthase modules and related proteins, at 260,237 to 264,835
GFF1637
GFF1638 - Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 264,832 to 268,113
GFF1638
GFF1639 - Polyketide synthase modules and related proteins, at 268,110 to 271,196
GFF1639
Position (kb) 264
265
266
267
268
269 Strain fitness (log2 ratio) -1
0
1
2 at 263.878 kb on - strand, within GFF1637 at 264.319 kb on - strand, within GFF1637 at 264.432 kb on + strand at 264.456 kb on + strand at 264.556 kb on - strand at 265.143 kb on + strand at 265.346 kb on + strand, within GFF1638 at 265.643 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.697 kb on + strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.698 kb on - strand, within GFF1638 at 265.799 kb on + strand, within GFF1638 at 265.808 kb on + strand, within GFF1638 at 265.809 kb on - strand, within GFF1638 at 266.061 kb on + strand, within GFF1638 at 266.136 kb on - strand, within GFF1638 at 266.232 kb on - strand, within GFF1638 at 266.232 kb on - strand, within GFF1638 at 266.232 kb on - strand, within GFF1638 at 266.405 kb on + strand, within GFF1638 at 266.685 kb on - strand, within GFF1638 at 266.808 kb on - strand, within GFF1638 at 266.858 kb on + strand, within GFF1638 at 266.859 kb on - strand, within GFF1638 at 266.859 kb on - strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 266.894 kb on + strand, within GFF1638 at 267.244 kb on + strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.534 kb on - strand, within GFF1638 at 267.543 kb on - strand, within GFF1638 at 267.599 kb on + strand, within GFF1638 at 268.043 kb on + strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.044 kb on - strand at 268.781 kb on - strand, within GFF1639 at 268.781 kb on - strand, within GFF1639 at 268.894 kb on + strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.057 kb on - strand, within GFF1639 at 269.065 kb on + strand, within GFF1639 at 269.066 kb on - strand, within GFF1639 at 269.070 kb on - strand, within GFF1639
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 263,878 - GFF1637 0.79 -0.4 264,319 - GFF1637 0.89 -0.1 264,432 + -0.2 264,456 + -0.5 264,556 - -1.0 265,143 + +0.7 265,346 + GFF1638 0.16 -0.1 265,643 + GFF1638 0.25 -0.2 265,697 + GFF1638 0.26 -0.9 265,697 + GFF1638 0.26 +0.3 265,697 + GFF1638 0.26 -0.8 265,698 - GFF1638 0.26 -1.2 265,698 - GFF1638 0.26 -0.9 265,698 - GFF1638 0.26 -0.2 265,698 - GFF1638 0.26 -0.4 265,799 + GFF1638 0.29 -1.1 265,808 + GFF1638 0.30 -0.7 265,809 - GFF1638 0.30 -0.9 266,061 + GFF1638 0.37 -1.3 266,136 - GFF1638 0.40 +0.2 266,232 - GFF1638 0.43 -1.0 266,232 - GFF1638 0.43 -0.0 266,232 - GFF1638 0.43 -1.7 266,405 + GFF1638 0.48 +0.2 266,685 - GFF1638 0.56 -0.4 266,808 - GFF1638 0.60 +0.3 266,858 + GFF1638 0.62 -1.0 266,859 - GFF1638 0.62 -0.1 266,859 - GFF1638 0.62 -0.5 266,894 + GFF1638 0.63 +0.3 266,894 + GFF1638 0.63 +2.5 266,894 + GFF1638 0.63 -0.4 266,894 + GFF1638 0.63 +0.9 266,894 + GFF1638 0.63 -1.7 266,894 + GFF1638 0.63 +0.5 267,244 + GFF1638 0.73 -0.5 267,534 - GFF1638 0.82 -0.4 267,534 - GFF1638 0.82 -1.1 267,543 - GFF1638 0.83 -0.8 267,599 + GFF1638 0.84 -0.6 268,043 + -0.2 268,044 - -0.4 268,044 - +1.9 268,044 - -0.9 268,781 - GFF1639 0.22 -0.6 268,781 - GFF1639 0.22 -0.9 268,894 + GFF1639 0.25 +0.3 269,057 - GFF1639 0.31 -0.4 269,057 - GFF1639 0.31 -0.7 269,065 + GFF1639 0.31 +0.5 269,066 - GFF1639 0.31 +0.4 269,070 - GFF1639 0.31 -0.4
Or see this region's nucleotide sequence