Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1574 and GFF1575 overlap by 4 nucleotides GFF1575 and GFF1576 are separated by 19 nucleotides GFF1576 and GFF1577 are separated by 19 nucleotides GFF1577 and GFF1578 are separated by 24 nucleotides
GFF1574 - Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase, at 174,476 to 175,687
GFF1574
GFF1575 - BUG/TctC family periplasmic protein, at 175,684 to 176,655
GFF1575
GFF1576 - 2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57), at 176,675 to 177,592
GFF1576
GFF1577 - hypothetical protein, at 177,612 to 178,052
GFF1577
GFF1578 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 178,077 to 178,706
GFF1578
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.149 kb on + strand, within GFF1575 at 176.149 kb on + strand, within GFF1575 at 176.149 kb on + strand, within GFF1575 at 176.149 kb on + strand, within GFF1575 at 176.150 kb on - strand, within GFF1575 at 176.150 kb on - strand, within GFF1575 at 176.606 kb on - strand at 176.606 kb on - strand at 176.826 kb on - strand, within GFF1576 at 176.843 kb on + strand, within GFF1576 at 176.843 kb on + strand, within GFF1576 at 176.844 kb on - strand, within GFF1576 at 176.987 kb on + strand, within GFF1576 at 176.987 kb on + strand, within GFF1576 at 176.988 kb on - strand, within GFF1576 at 177.228 kb on - strand, within GFF1576 at 177.228 kb on - strand, within GFF1576 at 177.349 kb on + strand, within GFF1576 at 177.350 kb on - strand, within GFF1576 at 177.579 kb on - strand at 177.675 kb on + strand, within GFF1577 at 177.714 kb on + strand, within GFF1577 at 177.714 kb on + strand, within GFF1577 at 177.714 kb on + strand, within GFF1577 at 177.715 kb on - strand, within GFF1577 at 177.718 kb on - strand, within GFF1577 at 177.718 kb on - strand, within GFF1577 at 177.787 kb on - strand, within GFF1577 at 177.882 kb on + strand, within GFF1577 at 177.882 kb on + strand, within GFF1577 at 177.882 kb on + strand, within GFF1577 at 177.883 kb on - strand, within GFF1577 at 177.898 kb on - strand, within GFF1577
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 176,149 + GFF1575 0.48 -0.4 176,149 + GFF1575 0.48 -0.1 176,149 + GFF1575 0.48 -0.2 176,149 + GFF1575 0.48 +0.4 176,150 - GFF1575 0.48 +0.5 176,150 - GFF1575 0.48 +1.1 176,606 - +1.4 176,606 - -0.5 176,826 - GFF1576 0.16 -1.5 176,843 + GFF1576 0.18 +0.3 176,843 + GFF1576 0.18 -0.1 176,844 - GFF1576 0.18 -0.6 176,987 + GFF1576 0.34 +0.5 176,987 + GFF1576 0.34 -0.1 176,988 - GFF1576 0.34 -1.6 177,228 - GFF1576 0.60 -0.8 177,228 - GFF1576 0.60 -3.1 177,349 + GFF1576 0.73 -1.0 177,350 - GFF1576 0.74 -0.9 177,579 - -1.3 177,675 + GFF1577 0.14 +2.9 177,714 + GFF1577 0.23 +0.0 177,714 + GFF1577 0.23 -1.1 177,714 + GFF1577 0.23 +1.3 177,715 - GFF1577 0.23 -0.3 177,718 - GFF1577 0.24 +0.5 177,718 - GFF1577 0.24 -0.3 177,787 - GFF1577 0.40 -0.1 177,882 + GFF1577 0.61 -0.6 177,882 + GFF1577 0.61 +0.7 177,882 + GFF1577 0.61 +0.1 177,883 - GFF1577 0.61 -0.3 177,898 - GFF1577 0.65 +0.1
Or see this region's nucleotide sequence