Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1386 and GFF1387 are separated by 41 nucleotides GFF1387 and GFF1388 overlap by 4 nucleotides GFF1388 and GFF1389 overlap by 4 nucleotides
GFF1386 - Uncharacterized transporter YebQ, major facilitator superfamily (MFS), at 732,737 to 734,095
GFF1386
GFF1387 - Paraquat-inducible protein A, at 734,137 to 734,763
GFF1387
GFF1388 - Paraquat-inducible protein A, at 734,760 to 735,506
GFF1388
GFF1389 - Paraquat-inducible protein B, at 735,503 to 737,149
GFF1389
Position (kb) 734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 734.102 kb on + strand at 734.115 kb on + strand at 734.115 kb on + strand at 734.115 kb on + strand at 734.116 kb on - strand at 734.116 kb on - strand at 734.116 kb on - strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.127 kb on - strand at 734.127 kb on - strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.465 kb on - strand, within GFF1387 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.007 kb on + strand, within GFF1388 at 735.008 kb on - strand, within GFF1388 at 735.060 kb on + strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.087 kb on + strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.109 kb on - strand, within GFF1388 at 735.237 kb on + strand, within GFF1388 at 735.238 kb on - strand, within GFF1388 at 735.735 kb on - strand, within GFF1389 at 735.735 kb on - strand, within GFF1389 at 735.735 kb on - strand, within GFF1389 at 735.735 kb on - strand, within GFF1389 at 735.795 kb on + strand, within GFF1389 at 735.795 kb on + strand, within GFF1389 at 735.795 kb on + strand, within GFF1389 at 735.796 kb on - strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.924 kb on - strand, within GFF1389 at 735.924 kb on - strand, within GFF1389 at 735.924 kb on - strand, within GFF1389 at 736.073 kb on + strand, within GFF1389 at 736.073 kb on + strand, within GFF1389 at 736.074 kb on - strand, within GFF1389 at 736.074 kb on - strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.413 kb on - strand, within GFF1389 at 736.413 kb on - strand, within GFF1389
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 734,102 + +0.2 734,115 + +0.9 734,115 + +0.9 734,115 + -0.4 734,116 - +1.5 734,116 - -1.5 734,116 - -0.6 734,126 + +0.5 734,126 + +2.9 734,126 + -0.9 734,126 + +0.3 734,127 - -0.4 734,127 - +0.9 734,164 + -0.4 734,164 + +0.3 734,164 + +0.7 734,164 + -0.8 734,465 - GFF1387 0.52 +0.6 735,003 + GFF1388 0.33 +1.7 735,003 + GFF1388 0.33 +0.5 735,003 + GFF1388 0.33 +0.2 735,003 + GFF1388 0.33 +0.8 735,003 + GFF1388 0.33 +0.4 735,003 + GFF1388 0.33 -1.1 735,003 + GFF1388 0.33 -0.8 735,003 + GFF1388 0.33 -0.8 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 -0.5 735,003 + GFF1388 0.33 -0.4 735,003 + GFF1388 0.33 -0.2 735,003 + GFF1388 0.33 +0.9 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 -1.2 735,003 + GFF1388 0.33 -0.6 735,003 + GFF1388 0.33 +1.2 735,003 + GFF1388 0.33 -0.4 735,003 + GFF1388 0.33 -0.7 735,003 + GFF1388 0.33 -1.4 735,004 - GFF1388 0.33 -0.2 735,004 - GFF1388 0.33 -0.7 735,004 - GFF1388 0.33 -0.6 735,004 - GFF1388 0.33 -1.3 735,004 - GFF1388 0.33 -0.4 735,004 - GFF1388 0.33 -0.1 735,004 - GFF1388 0.33 +3.7 735,004 - GFF1388 0.33 +0.3 735,004 - GFF1388 0.33 -0.2 735,004 - GFF1388 0.33 +0.5 735,004 - GFF1388 0.33 -0.1 735,004 - GFF1388 0.33 -0.2 735,004 - GFF1388 0.33 +0.1 735,004 - GFF1388 0.33 -0.6 735,004 - GFF1388 0.33 -0.1 735,007 + GFF1388 0.33 +0.1 735,008 - GFF1388 0.33 -1.8 735,060 + GFF1388 0.40 +0.6 735,061 - GFF1388 0.40 -2.1 735,061 - GFF1388 0.40 -2.0 735,061 - GFF1388 0.40 -1.2 735,087 + GFF1388 0.44 +1.3 735,088 - GFF1388 0.44 +0.1 735,088 - GFF1388 0.44 +0.3 735,088 - GFF1388 0.44 -0.1 735,088 - GFF1388 0.44 -0.7 735,109 - GFF1388 0.47 -0.3 735,237 + GFF1388 0.64 +0.9 735,238 - GFF1388 0.64 +1.2 735,735 - GFF1389 0.14 +0.2 735,735 - GFF1389 0.14 -1.6 735,735 - GFF1389 0.14 -0.7 735,735 - GFF1389 0.14 -1.8 735,795 + GFF1389 0.18 -0.0 735,795 + GFF1389 0.18 -1.6 735,795 + GFF1389 0.18 +0.2 735,796 - GFF1389 0.18 -0.4 735,923 + GFF1389 0.26 +0.3 735,923 + GFF1389 0.26 -0.6 735,923 + GFF1389 0.26 +0.3 735,923 + GFF1389 0.26 +0.0 735,924 - GFF1389 0.26 +0.9 735,924 - GFF1389 0.26 +0.7 735,924 - GFF1389 0.26 -0.5 736,073 + GFF1389 0.35 +1.6 736,073 + GFF1389 0.35 -0.5 736,074 - GFF1389 0.35 -0.1 736,074 - GFF1389 0.35 +0.7 736,166 + GFF1389 0.40 -0.8 736,166 + GFF1389 0.40 +0.3 736,166 + GFF1389 0.40 +1.2 736,412 + GFF1389 0.55 +0.6 736,412 + GFF1389 0.55 -1.1 736,413 - GFF1389 0.55 -0.4 736,413 - GFF1389 0.55 -1.0
Or see this region's nucleotide sequence