Strain Fitness in Variovorax sp. SCN45 around GFF1338

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1337 and GFF1338 are separated by 80 nucleotidesGFF1338 and GFF1339 are separated by 4 nucleotides GFF1337 - ABC transporter, substrate-binding protein RSc1750, at 678,636 to 679,868 GFF1337 GFF1338 - ABC transporter, permease protein 1 RSc1751, at 679,949 to 680,902 GFF1338 GFF1339 - ABC transporter, permease protein 2 RSc1752, at 680,907 to 682,235 GFF1339 Position (kb) 679 680 681Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 679.014 kb on + strand, within GFF1337at 679.015 kb on - strand, within GFF1337at 679.065 kb on + strand, within GFF1337at 679.066 kb on - strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.122 kb on + strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.123 kb on - strand, within GFF1337at 679.156 kb on - strand, within GFF1337at 679.156 kb on - strand, within GFF1337at 679.156 kb on - strand, within GFF1337at 679.156 kb on - strand, within GFF1337at 679.173 kb on + strand, within GFF1337at 679.174 kb on - strand, within GFF1337at 679.200 kb on + strand, within GFF1337at 679.200 kb on + strand, within GFF1337at 679.201 kb on - strand, within GFF1337at 679.201 kb on - strand, within GFF1337at 679.201 kb on - strand, within GFF1337at 679.293 kb on + strand, within GFF1337at 679.294 kb on - strand, within GFF1337at 679.407 kb on + strand, within GFF1337at 679.407 kb on + strand, within GFF1337at 679.408 kb on - strand, within GFF1337at 679.408 kb on - strand, within GFF1337at 679.413 kb on + strand, within GFF1337at 679.414 kb on - strand, within GFF1337at 679.414 kb on - strand, within GFF1337at 679.414 kb on - strand, within GFF1337at 679.414 kb on - strand, within GFF1337at 679.414 kb on - strand, within GFF1337at 679.416 kb on + strand, within GFF1337at 679.416 kb on + strand, within GFF1337at 679.473 kb on + strand, within GFF1337at 679.473 kb on + strand, within GFF1337at 679.473 kb on + strand, within GFF1337at 679.473 kb on + strand, within GFF1337at 679.473 kb on + strand, within GFF1337at 679.474 kb on - strand, within GFF1337at 679.494 kb on + strand, within GFF1337at 679.495 kb on - strand, within GFF1337at 679.495 kb on - strand, within GFF1337at 679.495 kb on - strand, within GFF1337at 679.522 kb on - strand, within GFF1337at 679.561 kb on - strand, within GFF1337at 679.561 kb on - strand, within GFF1337at 679.575 kb on + strand, within GFF1337at 679.575 kb on + strand, within GFF1337at 679.576 kb on - strand, within GFF1337at 679.576 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.729 kb on - strand, within GFF1337at 679.761 kb on + strandat 679.761 kb on + strandat 679.768 kb on - strandat 679.809 kb on + strandat 679.809 kb on + strandat 679.810 kb on - strandat 679.812 kb on + strandat 679.812 kb on + strandat 679.812 kb on + strandat 679.813 kb on - strandat 679.813 kb on - strandat 679.813 kb on - strandat 679.821 kb on + strandat 679.821 kb on + strandat 679.821 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.994 kb on + strandat 679.995 kb on - strandat 679.995 kb on - strandat 679.995 kb on - strandat 679.995 kb on - strandat 679.995 kb on - strandat 680.081 kb on + strand, within GFF1338at 680.082 kb on - strand, within GFF1338at 680.097 kb on - strand, within GFF1338at 680.193 kb on - strand, within GFF1338at 680.258 kb on + strand, within GFF1338at 680.351 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.585 kb on + strand, within GFF1338at 680.586 kb on - strand, within GFF1338at 680.586 kb on - strand, within GFF1338at 680.586 kb on - strand, within GFF1338at 680.790 kb on - strand, within GFF1338at 680.837 kb on + strandat 680.837 kb on + strandat 680.838 kb on - strandat 680.913 kb on - strandat 680.913 kb on - strandat 680.952 kb on + strandat 680.952 kb on + strandat 680.952 kb on + strandat 680.953 kb on - strandat 680.953 kb on - strandat 680.953 kb on - strandat 680.955 kb on + strandat 681.078 kb on + strand, within GFF1339at 681.102 kb on + strand, within GFF1339at 681.103 kb on - strand, within GFF1339at 681.103 kb on - strand, within GFF1339at 681.153 kb on + strand, within GFF1339at 681.154 kb on - strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.465 kb on + strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.466 kb on - strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.468 kb on + strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.469 kb on - strand, within GFF1339at 681.483 kb on + strand, within GFF1339at 681.723 kb on + strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.724 kb on - strand, within GFF1339at 681.840 kb on + strand, within GFF1339at 681.840 kb on + strand, within GFF1339at 681.841 kb on - strand, within GFF1339

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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679,014 + GFF1337 0.31 -1.0
679,015 - GFF1337 0.31 +0.3
679,065 + GFF1337 0.35 -0.6
679,066 - GFF1337 0.35 -1.1
679,122 + GFF1337 0.39 -0.6
679,122 + GFF1337 0.39 +0.3
679,122 + GFF1337 0.39 +0.1
679,122 + GFF1337 0.39 +0.9
679,122 + GFF1337 0.39 -0.1
679,122 + GFF1337 0.39 -0.3
679,122 + GFF1337 0.39 +0.1
679,123 - GFF1337 0.39 -0.4
679,123 - GFF1337 0.39 +0.3
679,123 - GFF1337 0.39 +0.4
679,123 - GFF1337 0.39 -0.1
679,123 - GFF1337 0.39 +1.2
679,123 - GFF1337 0.39 +0.0
679,123 - GFF1337 0.39 -0.0
679,156 - GFF1337 0.42 -1.1
679,156 - GFF1337 0.42 -2.1
679,156 - GFF1337 0.42 +0.3
679,156 - GFF1337 0.42 +0.4
679,173 + GFF1337 0.44 +0.1
679,174 - GFF1337 0.44 +4.9
679,200 + GFF1337 0.46 -0.7
679,200 + GFF1337 0.46 -0.3
679,201 - GFF1337 0.46 +0.7
679,201 - GFF1337 0.46 +0.2
679,201 - GFF1337 0.46 +0.4
679,293 + GFF1337 0.53 -0.1
679,294 - GFF1337 0.53 -0.2
679,407 + GFF1337 0.63 +0.5
679,407 + GFF1337 0.63 -0.4
679,408 - GFF1337 0.63 -1.6
679,408 - GFF1337 0.63 -0.2
679,413 + GFF1337 0.63 -0.9
679,414 - GFF1337 0.63 -0.0
679,414 - GFF1337 0.63 -0.9
679,414 - GFF1337 0.63 -0.9
679,414 - GFF1337 0.63 +0.0
679,414 - GFF1337 0.63 +2.9
679,416 + GFF1337 0.63 +0.1
679,416 + GFF1337 0.63 -0.6
679,473 + GFF1337 0.68 +0.1
679,473 + GFF1337 0.68 -0.6
679,473 + GFF1337 0.68 +0.2
679,473 + GFF1337 0.68 -0.6
679,473 + GFF1337 0.68 +0.6
679,474 - GFF1337 0.68 -1.8
679,494 + GFF1337 0.70 -1.4
679,495 - GFF1337 0.70 -0.8
679,495 - GFF1337 0.70 -1.3
679,495 - GFF1337 0.70 +1.0
679,522 - GFF1337 0.72 -2.3
679,561 - GFF1337 0.75 +0.1
679,561 - GFF1337 0.75 -0.5
679,575 + GFF1337 0.76 +0.3
679,575 + GFF1337 0.76 +1.4
679,576 - GFF1337 0.76 -1.1
679,576 - GFF1337 0.76 +1.2
679,729 - GFF1337 0.89 +0.1
679,729 - GFF1337 0.89 +0.0
679,729 - GFF1337 0.89 -0.2
679,729 - GFF1337 0.89 +0.5
679,729 - GFF1337 0.89 +2.5
679,729 - GFF1337 0.89 -0.2
679,729 - GFF1337 0.89 +0.3
679,761 + -0.0
679,761 + -1.1
679,768 - +0.7
679,809 + -0.9
679,809 + -0.2
679,810 - +0.3
679,812 + -0.7
679,812 + +0.9
679,812 + -1.0
679,813 - -0.1
679,813 - -1.3
679,813 - +2.2
679,821 + +0.1
679,821 + -0.4
679,821 + -0.5
679,994 + -0.9
679,994 + +1.2
679,994 + -0.7
679,994 + -1.3
679,994 + +0.3
679,995 - -0.3
679,995 - +0.9
679,995 - +0.5
679,995 - -0.5
679,995 - -0.1
680,081 + GFF1338 0.14 +0.4
680,082 - GFF1338 0.14 +0.7
680,097 - GFF1338 0.16 -0.1
680,193 - GFF1338 0.26 +1.9
680,258 + GFF1338 0.32 +0.1
680,351 + GFF1338 0.42 +0.4
680,585 + GFF1338 0.67 -0.3
680,585 + GFF1338 0.67 -1.3
680,585 + GFF1338 0.67 +1.3
680,585 + GFF1338 0.67 +0.3
680,586 - GFF1338 0.67 -1.7
680,586 - GFF1338 0.67 -0.5
680,586 - GFF1338 0.67 +0.5
680,790 - GFF1338 0.88 -0.4
680,837 + +0.1
680,837 + -0.6
680,838 - +0.7
680,913 - -0.7
680,913 - -0.4
680,952 + -0.7
680,952 + -0.6
680,952 + -0.3
680,953 - -1.6
680,953 - -0.9
680,953 - -0.8
680,955 + +0.6
681,078 + GFF1339 0.13 -0.1
681,102 + GFF1339 0.15 -0.3
681,103 - GFF1339 0.15 +0.9
681,103 - GFF1339 0.15 -1.4
681,153 + GFF1339 0.19 +2.5
681,154 - GFF1339 0.19 -1.3
681,465 + GFF1339 0.42 -1.4
681,465 + GFF1339 0.42 +0.1
681,465 + GFF1339 0.42 +0.1
681,465 + GFF1339 0.42 -0.4
681,466 - GFF1339 0.42 +0.2
681,466 - GFF1339 0.42 -0.4
681,466 - GFF1339 0.42 +0.1
681,466 - GFF1339 0.42 -0.4
681,466 - GFF1339 0.42 +0.1
681,466 - GFF1339 0.42 -0.6
681,466 - GFF1339 0.42 +0.1
681,466 - GFF1339 0.42 +0.3
681,468 + GFF1339 0.42 +0.3
681,468 + GFF1339 0.42 -0.4
681,468 + GFF1339 0.42 -0.6
681,469 - GFF1339 0.42 +0.4
681,469 - GFF1339 0.42 +0.1
681,469 - GFF1339 0.42 -0.4
681,483 + GFF1339 0.43 -0.7
681,723 + GFF1339 0.61 -0.3
681,724 - GFF1339 0.61 +0.6
681,724 - GFF1339 0.61 -0.8
681,724 - GFF1339 0.61 -0.7
681,840 + GFF1339 0.70 +0.1
681,840 + GFF1339 0.70 -2.0
681,841 - GFF1339 0.70 -1.7

Or see this region's nucleotide sequence