Strain Fitness in Variovorax sp. SCN45 around GFF1300

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1299 and GFF1300 are separated by 113 nucleotidesGFF1300 and GFF1301 are separated by 49 nucleotidesGFF1301 and GFF1302 are separated by 3 nucleotides GFF1299 - DNA ligase (NAD(+)) (EC 6.5.1.2), at 629,858 to 631,942 GFF1299 GFF1300 - hypothetical protein, at 632,056 to 632,472 GFF1300 GFF1301 - Peptide deformylase (EC 3.5.1.88), at 632,522 to 633,061 GFF1301 GFF1302 - DoxX family protein, at 633,065 to 633,460 GFF1302 Position (kb) 632 633Strain fitness (log2 ratio) -2 -1 0 1 2 3at 631.940 kb on + strandat 631.941 kb on - strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.007 kb on + strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.008 kb on - strandat 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.143 kb on + strand, within GFF1300at 632.144 kb on - strand, within GFF1300at 632.144 kb on - strand, within GFF1300at 632.158 kb on + strand, within GFF1300at 632.158 kb on + strand, within GFF1300at 632.158 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.173 kb on + strand, within GFF1300at 632.174 kb on - strand, within GFF1300at 632.174 kb on - strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.176 kb on + strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.177 kb on - strand, within GFF1300at 632.218 kb on + strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.219 kb on - strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.236 kb on + strand, within GFF1300at 632.237 kb on - strand, within GFF1300at 632.237 kb on - strand, within GFF1300at 632.237 kb on - strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.239 kb on + strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.240 kb on - strand, within GFF1300at 632.257 kb on + strand, within GFF1300at 632.257 kb on + strand, within GFF1300at 632.257 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.258 kb on - strand, within GFF1300at 632.260 kb on + strand, within GFF1300at 632.260 kb on + strand, within GFF1300at 632.260 kb on + strand, within GFF1300at 632.261 kb on - strand, within GFF1300at 632.275 kb on + strand, within GFF1300at 632.276 kb on - strand, within GFF1300at 632.276 kb on - strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.278 kb on + strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.279 kb on - strand, within GFF1300at 632.293 kb on + strand, within GFF1300at 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.457 kb on + strandat 632.458 kb on - strandat 632.458 kb on - strandat 632.512 kb on + strandat 632.679 kb on + strand, within GFF1301at 632.679 kb on + strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.680 kb on - strand, within GFF1301at 632.876 kb on + strand, within GFF1301at 632.877 kb on - strand, within GFF1301at 632.877 kb on - strand, within GFF1301at 632.877 kb on - strand, within GFF1301at 632.879 kb on - strand, within GFF1301at 632.894 kb on + strand, within GFF1301at 632.894 kb on + strand, within GFF1301at 632.978 kb on + strand, within GFF1301at 632.979 kb on - strand, within GFF1301at 633.014 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.066 kb on + strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.067 kb on - strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.072 kb on + strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.073 kb on - strandat 633.258 kb on + strand, within GFF1302at 633.258 kb on + strand, within GFF1302at 633.258 kb on + strand, within GFF1302at 633.258 kb on + strand, within GFF1302at 633.259 kb on - strand, within GFF1302at 633.259 kb on - strand, within GFF1302at 633.259 kb on - strand, within GFF1302at 633.259 kb on - strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.303 kb on + strand, within GFF1302at 633.304 kb on - strand, within GFF1302at 633.304 kb on - strand, within GFF1302at 633.304 kb on - strand, within GFF1302at 633.304 kb on - strand, within GFF1302at 633.304 kb on - strand, within GFF1302at 633.304 kb on - strand, within GFF1302at 633.312 kb on + strand, within GFF1302at 633.313 kb on - strand, within GFF1302at 633.313 kb on - strand, within GFF1302at 633.313 kb on - strand, within GFF1302at 633.466 kb on + strandat 633.467 kb on - strandat 633.467 kb on - strandat 633.467 kb on - strandat 633.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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631,940 + +0.8
631,941 - -0.2
632,007 + +1.1
632,007 + -1.4
632,007 + -0.9
632,007 + -0.1
632,007 + +0.1
632,007 + +0.7
632,008 - -0.1
632,008 - +0.5
632,008 - -0.6
632,008 - +0.3
632,008 - -1.5
632,008 - +0.1
632,008 - +0.2
632,008 - +0.1
632,008 - -1.3
632,008 - -0.5
632,143 + GFF1300 0.21 +1.9
632,143 + GFF1300 0.21 +0.2
632,143 + GFF1300 0.21 -1.9
632,143 + GFF1300 0.21 -0.4
632,143 + GFF1300 0.21 +0.1
632,143 + GFF1300 0.21 -1.7
632,143 + GFF1300 0.21 -0.4
632,143 + GFF1300 0.21 -0.5
632,143 + GFF1300 0.21 -0.3
632,143 + GFF1300 0.21 +0.2
632,143 + GFF1300 0.21 -0.6
632,144 - GFF1300 0.21 -2.0
632,144 - GFF1300 0.21 -0.5
632,158 + GFF1300 0.24 -0.2
632,158 + GFF1300 0.24 -0.4
632,158 + GFF1300 0.24 -1.0
632,173 + GFF1300 0.28 -0.3
632,173 + GFF1300 0.28 -1.5
632,173 + GFF1300 0.28 -1.1
632,173 + GFF1300 0.28 +0.1
632,174 - GFF1300 0.28 +0.6
632,174 - GFF1300 0.28 -1.1
632,176 + GFF1300 0.29 -1.4
632,176 + GFF1300 0.29 +0.7
632,176 + GFF1300 0.29 -0.5
632,176 + GFF1300 0.29 -1.3
632,176 + GFF1300 0.29 -0.8
632,176 + GFF1300 0.29 -0.5
632,176 + GFF1300 0.29 +0.3
632,176 + GFF1300 0.29 -1.8
632,176 + GFF1300 0.29 -1.8
632,176 + GFF1300 0.29 -0.4
632,176 + GFF1300 0.29 -0.1
632,176 + GFF1300 0.29 -0.5
632,177 - GFF1300 0.29 -1.7
632,177 - GFF1300 0.29 +0.9
632,177 - GFF1300 0.29 +1.6
632,177 - GFF1300 0.29 +0.4
632,177 - GFF1300 0.29 -0.7
632,177 - GFF1300 0.29 -0.4
632,177 - GFF1300 0.29 +3.5
632,177 - GFF1300 0.29 -1.3
632,218 + GFF1300 0.39 -0.7
632,219 - GFF1300 0.39 -0.7
632,219 - GFF1300 0.39 -0.0
632,219 - GFF1300 0.39 -2.4
632,219 - GFF1300 0.39 -1.3
632,219 - GFF1300 0.39 +0.0
632,219 - GFF1300 0.39 +1.4
632,219 - GFF1300 0.39 -1.3
632,236 + GFF1300 0.43 +0.7
632,236 + GFF1300 0.43 -0.3
632,236 + GFF1300 0.43 +0.9
632,236 + GFF1300 0.43 -1.1
632,236 + GFF1300 0.43 -0.2
632,236 + GFF1300 0.43 -0.3
632,236 + GFF1300 0.43 -0.8
632,237 - GFF1300 0.43 +0.3
632,237 - GFF1300 0.43 +0.9
632,237 - GFF1300 0.43 -0.4
632,239 + GFF1300 0.44 +0.0
632,239 + GFF1300 0.44 -1.0
632,239 + GFF1300 0.44 -1.4
632,239 + GFF1300 0.44 -0.6
632,239 + GFF1300 0.44 +1.5
632,239 + GFF1300 0.44 +0.3
632,239 + GFF1300 0.44 -1.1
632,240 - GFF1300 0.44 -2.7
632,240 - GFF1300 0.44 -1.6
632,240 - GFF1300 0.44 +2.3
632,240 - GFF1300 0.44 -0.6
632,240 - GFF1300 0.44 -0.5
632,240 - GFF1300 0.44 -1.0
632,240 - GFF1300 0.44 -0.2
632,240 - GFF1300 0.44 -1.6
632,240 - GFF1300 0.44 -0.3
632,257 + GFF1300 0.48 -1.1
632,257 + GFF1300 0.48 -0.2
632,257 - GFF1300 0.48 -0.2
632,258 - GFF1300 0.48 -0.8
632,258 - GFF1300 0.48 +2.5
632,258 - GFF1300 0.48 -0.4
632,258 - GFF1300 0.48 -1.4
632,260 + GFF1300 0.49 -0.3
632,260 + GFF1300 0.49 -0.1
632,260 + GFF1300 0.49 -0.2
632,261 - GFF1300 0.49 +0.6
632,275 + GFF1300 0.53 -0.4
632,276 - GFF1300 0.53 +0.1
632,276 - GFF1300 0.53 -2.5
632,278 + GFF1300 0.53 +0.9
632,278 + GFF1300 0.53 +0.1
632,278 + GFF1300 0.53 -1.5
632,278 + GFF1300 0.53 -0.3
632,279 - GFF1300 0.53 -0.3
632,279 - GFF1300 0.53 -0.3
632,279 - GFF1300 0.53 -0.4
632,279 - GFF1300 0.53 -0.9
632,279 - GFF1300 0.53 +0.5
632,279 - GFF1300 0.53 -0.8
632,293 + GFF1300 0.57 -0.4
632,457 + +0.7
632,457 + -0.3
632,457 + -1.2
632,457 + -0.2
632,457 + +0.2
632,457 + -1.3
632,458 - +1.5
632,458 - -0.5
632,512 + -0.3
632,679 + GFF1301 0.29 -0.0
632,679 + GFF1301 0.29 -0.3
632,680 - GFF1301 0.29 +0.2
632,680 - GFF1301 0.29 +0.7
632,680 - GFF1301 0.29 -0.3
632,680 - GFF1301 0.29 +0.6
632,876 + GFF1301 0.66 +0.7
632,877 - GFF1301 0.66 +0.6
632,877 - GFF1301 0.66 -0.7
632,877 - GFF1301 0.66 -0.8
632,879 - GFF1301 0.66 +0.2
632,894 + GFF1301 0.69 -0.4
632,894 + GFF1301 0.69 -0.1
632,978 + GFF1301 0.84 -1.3
632,979 - GFF1301 0.85 -0.1
633,014 + -0.9
633,066 + +0.6
633,066 + +0.3
633,066 + -0.0
633,066 + +0.7
633,066 + -0.9
633,066 + +0.4
633,066 + -1.8
633,066 + -1.0
633,066 + -0.3
633,066 + +0.2
633,066 + -0.0
633,067 - +0.3
633,067 - +0.9
633,067 - +0.6
633,067 - +0.1
633,067 - -0.1
633,067 - +0.6
633,067 - -1.1
633,067 - -0.5
633,067 - +0.4
633,067 - -1.2
633,072 + -0.7
633,072 + -0.2
633,072 + -0.8
633,072 + -0.4
633,072 + -1.6
633,072 + -0.4
633,072 + +0.1
633,072 + +0.9
633,072 + +0.2
633,072 + -0.7
633,072 + -0.7
633,072 + -0.3
633,072 + +0.6
633,073 - -0.6
633,073 - -0.1
633,073 - -0.4
633,073 - -1.0
633,073 - -0.7
633,073 - +0.4
633,073 - +0.1
633,073 - +0.3
633,073 - +0.2
633,073 - +1.2
633,073 - -0.7
633,073 - -0.7
633,073 - -0.5
633,073 - -0.1
633,073 - -0.4
633,258 + GFF1302 0.49 +0.1
633,258 + GFF1302 0.49 -0.5
633,258 + GFF1302 0.49 -0.9
633,258 + GFF1302 0.49 -0.4
633,259 - GFF1302 0.49 +0.9
633,259 - GFF1302 0.49 -0.6
633,259 - GFF1302 0.49 -1.3
633,259 - GFF1302 0.49 -0.1
633,303 + GFF1302 0.60 +0.3
633,303 + GFF1302 0.60 +0.7
633,303 + GFF1302 0.60 +0.1
633,303 + GFF1302 0.60 +0.1
633,303 + GFF1302 0.60 +0.2
633,303 + GFF1302 0.60 +0.1
633,303 + GFF1302 0.60 -0.3
633,304 - GFF1302 0.60 -1.6
633,304 - GFF1302 0.60 -0.5
633,304 - GFF1302 0.60 -1.5
633,304 - GFF1302 0.60 -0.2
633,304 - GFF1302 0.60 +0.0
633,304 - GFF1302 0.60 +0.1
633,312 + GFF1302 0.62 -1.1
633,313 - GFF1302 0.63 -0.7
633,313 - GFF1302 0.63 -2.4
633,313 - GFF1302 0.63 -0.1
633,466 + -2.0
633,467 - +0.6
633,467 - -0.8
633,467 - +0.3
633,467 - -1.0

Or see this region's nucleotide sequence