Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1052 and GFF1053 are separated by 118 nucleotides GFF1053 and GFF1054 are separated by 137 nucleotides GFF1054 and GFF1055 are separated by 46 nucleotides GFF1055 and GFF1056 are separated by 21 nucleotides
GFF1052 - hypothetical protein, at 366,918 to 367,490
GFF1052
GFF1053 - no description, at 367,609 to 368,298
GFF1053
GFF1054 - Catechol 2,3-dioxygenase (EC 1.13.11.2), at 368,436 to 369,419
GFF1054
GFF1055 - Fumarylacetoacetate hydrolase family protein, at 369,466 to 370,326
GFF1055
GFF1056 - hypothetical protein, at 370,348 to 370,662
GFF1056
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 367.450 kb on + strand at 367.450 kb on + strand at 367.450 kb on + strand at 367.474 kb on + strand at 367.474 kb on + strand at 367.475 kb on - strand at 367.475 kb on - strand at 367.475 kb on - strand at 367.475 kb on - strand at 367.566 kb on - strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.793 kb on + strand, within GFF1053 at 367.811 kb on + strand, within GFF1053 at 367.811 kb on + strand, within GFF1053 at 367.811 kb on + strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 368.029 kb on + strand, within GFF1053 at 368.029 kb on + strand, within GFF1053 at 368.029 kb on + strand, within GFF1053 at 368.257 kb on + strand at 368.257 kb on + strand at 368.257 kb on + strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.357 kb on + strand at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.554 kb on - strand, within GFF1054 at 368.554 kb on - strand, within GFF1054 at 368.554 kb on - strand, within GFF1054 at 368.604 kb on + strand, within GFF1054 at 368.604 kb on + strand, within GFF1054 at 368.604 kb on + strand, within GFF1054 at 368.605 kb on - strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.671 kb on - strand, within GFF1054 at 368.671 kb on - strand, within GFF1054 at 368.671 kb on - strand, within GFF1054 at 368.914 kb on + strand, within GFF1054 at 368.988 kb on + strand, within GFF1054 at 368.988 kb on + strand, within GFF1054 at 368.989 kb on - strand, within GFF1054 at 369.228 kb on + strand, within GFF1054 at 369.228 kb on + strand, within GFF1054 at 369.228 kb on + strand, within GFF1054 at 369.229 kb on - strand, within GFF1054 at 369.237 kb on + strand, within GFF1054 at 369.237 kb on + strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.261 kb on + strand, within GFF1054 at 369.261 kb on + strand, within GFF1054 at 369.261 kb on + strand, within GFF1054 at 369.262 kb on - strand, within GFF1054 at 369.262 kb on - strand, within GFF1054 at 369.270 kb on + strand, within GFF1054 at 369.270 kb on + strand, within GFF1054 at 369.271 kb on - strand, within GFF1054 at 369.271 kb on - strand, within GFF1054 at 369.271 kb on - strand, within GFF1054 at 369.345 kb on + strand at 369.345 kb on + strand at 369.345 kb on + strand at 369.345 kb on + strand at 369.345 kb on + strand at 369.345 kb on + strand at 369.345 kb on + strand at 369.346 kb on - strand at 369.346 kb on - strand at 369.346 kb on - strand at 369.346 kb on - strand at 369.417 kb on + strand at 369.417 kb on + strand at 369.418 kb on - strand at 369.456 kb on - strand at 369.712 kb on + strand, within GFF1055 at 369.712 kb on + strand, within GFF1055 at 369.712 kb on + strand, within GFF1055 at 369.713 kb on - strand, within GFF1055 at 369.713 kb on - strand, within GFF1055 at 369.713 kb on - strand, within GFF1055 at 369.713 kb on - strand, within GFF1055 at 369.713 kb on - strand, within GFF1055 at 369.754 kb on + strand, within GFF1055 at 369.754 kb on + strand, within GFF1055 at 369.841 kb on + strand, within GFF1055 at 369.842 kb on - strand, within GFF1055 at 369.883 kb on + strand, within GFF1055 at 369.883 kb on + strand, within GFF1055 at 369.883 kb on + strand, within GFF1055 at 369.883 kb on + strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.884 kb on - strand, within GFF1055 at 369.955 kb on + strand, within GFF1055 at 369.955 kb on + strand, within GFF1055 at 369.955 kb on + strand, within GFF1055 at 369.956 kb on - strand, within GFF1055 at 370.327 kb on + strand at 370.328 kb on - strand at 370.328 kb on - strand at 370.328 kb on - strand at 370.328 kb on - strand at 370.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 367,450 + -0.3 367,450 + +1.2 367,450 + -0.5 367,474 + +0.6 367,474 + -0.8 367,475 - +1.1 367,475 - -1.9 367,475 - -0.4 367,475 - -0.6 367,566 - +2.0 367,567 + -0.6 367,567 + -1.0 367,567 + -0.1 367,567 + +0.5 367,567 + +0.6 367,567 + -0.5 367,567 + +0.3 367,567 + +0.4 367,567 + +1.2 367,567 + -0.0 367,567 + +0.2 367,567 + -0.8 367,567 + -0.4 367,567 + -0.6 367,567 + -0.2 367,567 + -0.6 367,567 + -0.0 367,568 - +0.1 367,568 - -0.3 367,568 - +0.5 367,568 - -0.5 367,568 - -0.0 367,568 - +1.4 367,568 - +0.1 367,568 - +0.2 367,568 - -2.4 367,568 - -0.3 367,568 - -0.1 367,568 - +1.3 367,568 - +0.3 367,568 - -0.2 367,610 + +0.1 367,610 + -1.4 367,610 + +1.4 367,610 + +1.2 367,610 + -1.6 367,610 + +1.0 367,610 + +0.0 367,610 + +0.2 367,611 - -0.7 367,611 - +0.5 367,611 - -0.2 367,611 - +0.5 367,611 - -1.2 367,611 - +0.2 367,611 - -0.0 367,611 - -0.6 367,611 - -0.3 367,611 - +2.2 367,793 + GFF1053 0.27 +0.7 367,811 + GFF1053 0.29 -0.2 367,811 + GFF1053 0.29 +0.2 367,811 + GFF1053 0.29 -0.0 367,812 - GFF1053 0.29 +0.2 367,812 - GFF1053 0.29 +0.0 367,812 - GFF1053 0.29 -0.8 367,812 - GFF1053 0.29 +0.5 368,029 + GFF1053 0.61 +0.2 368,029 + GFF1053 0.61 -1.4 368,029 + GFF1053 0.61 +0.2 368,257 + -1.2 368,257 + -0.9 368,257 + -0.0 368,258 - +0.3 368,258 - -0.3 368,258 - -0.6 368,258 - +0.0 368,258 - +0.2 368,258 - +1.2 368,258 - -1.0 368,334 + -0.5 368,334 + +0.1 368,334 + -0.8 368,334 + -0.6 368,335 - +0.6 368,335 - -1.1 368,335 - -1.2 368,357 + -0.2 368,553 + GFF1054 0.12 -0.8 368,553 + GFF1054 0.12 -1.4 368,553 + GFF1054 0.12 -0.5 368,553 + GFF1054 0.12 -0.6 368,553 + GFF1054 0.12 +0.4 368,554 - GFF1054 0.12 -0.1 368,554 - GFF1054 0.12 +0.2 368,554 - GFF1054 0.12 +0.4 368,604 + GFF1054 0.17 +0.2 368,604 + GFF1054 0.17 +0.2 368,604 + GFF1054 0.17 +1.6 368,605 - GFF1054 0.17 +1.2 368,670 + GFF1054 0.24 +0.1 368,670 + GFF1054 0.24 +0.2 368,670 + GFF1054 0.24 +0.6 368,670 + GFF1054 0.24 -0.7 368,670 + GFF1054 0.24 +0.3 368,671 - GFF1054 0.24 +0.1 368,671 - GFF1054 0.24 -2.0 368,671 - GFF1054 0.24 -0.8 368,914 + GFF1054 0.49 -1.0 368,988 + GFF1054 0.56 -0.4 368,988 + GFF1054 0.56 +0.1 368,989 - GFF1054 0.56 +1.2 369,228 + GFF1054 0.80 +1.6 369,228 + GFF1054 0.80 +0.5 369,228 + GFF1054 0.80 +0.4 369,229 - GFF1054 0.81 -1.1 369,237 + GFF1054 0.81 -0.6 369,237 + GFF1054 0.81 -0.6 369,238 - GFF1054 0.82 -0.2 369,238 - GFF1054 0.82 +1.0 369,238 - GFF1054 0.82 +1.0 369,238 - GFF1054 0.82 -0.1 369,238 - GFF1054 0.82 +1.0 369,238 - GFF1054 0.82 -0.3 369,238 - GFF1054 0.82 -1.7 369,261 + GFF1054 0.84 +0.5 369,261 + GFF1054 0.84 -1.4 369,261 + GFF1054 0.84 +0.1 369,262 - GFF1054 0.84 +0.5 369,262 - GFF1054 0.84 -0.1 369,270 + GFF1054 0.85 -1.2 369,270 + GFF1054 0.85 +0.2 369,271 - GFF1054 0.85 +0.3 369,271 - GFF1054 0.85 +0.1 369,271 - GFF1054 0.85 +1.4 369,345 + +1.0 369,345 + -0.1 369,345 + -1.0 369,345 + -0.0 369,345 + -1.0 369,345 + -0.4 369,345 + +0.4 369,346 - +1.4 369,346 - -0.5 369,346 - -0.2 369,346 - -0.7 369,417 + +0.4 369,417 + +1.2 369,418 - +0.3 369,456 - -0.5 369,712 + GFF1055 0.29 -0.8 369,712 + GFF1055 0.29 -1.6 369,712 + GFF1055 0.29 -0.3 369,713 - GFF1055 0.29 -0.2 369,713 - GFF1055 0.29 +0.6 369,713 - GFF1055 0.29 -0.8 369,713 - GFF1055 0.29 -0.8 369,713 - GFF1055 0.29 -0.1 369,754 + GFF1055 0.33 +2.2 369,754 + GFF1055 0.33 +0.4 369,841 + GFF1055 0.44 -0.4 369,842 - GFF1055 0.44 +0.5 369,883 + GFF1055 0.48 -0.6 369,883 + GFF1055 0.48 -0.3 369,883 + GFF1055 0.48 -0.6 369,883 + GFF1055 0.48 +0.4 369,884 - GFF1055 0.49 -1.0 369,884 - GFF1055 0.49 +0.4 369,884 - GFF1055 0.49 +0.6 369,884 - GFF1055 0.49 +0.1 369,884 - GFF1055 0.49 +1.2 369,884 - GFF1055 0.49 +0.8 369,884 - GFF1055 0.49 +1.6 369,955 + GFF1055 0.57 +0.6 369,955 + GFF1055 0.57 +0.1 369,955 + GFF1055 0.57 -0.4 369,956 - GFF1055 0.57 -0.3 370,327 + -0.1 370,328 - -0.3 370,328 - +0.0 370,328 - -0.2 370,328 - +1.8 370,328 - +0.6
Or see this region's nucleotide sequence