Strain Fitness in Variovorax sp. SCN45 around GFF1049

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1048 and GFF1049 are separated by 66 nucleotidesGFF1049 and GFF1050 are separated by 73 nucleotidesGFF1050 and GFF1051 are separated by 15 nucleotides GFF1048 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 363,366 to 364,640 GFF1048 GFF1049 - low-specificity D-threonine aldolase, at 364,707 to 365,855 GFF1049 GFF1050 - Transcriptional regulator, LysR family, at 365,929 to 366,780 GFF1050 GFF1051 - no description, at 366,796 to 366,921 GFF1051 Position (kb) 364 365 366Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 363.793 kb on + strand, within GFF1048at 363.793 kb on + strand, within GFF1048at 363.793 kb on + strand, within GFF1048at 363.793 kb on + strand, within GFF1048at 363.793 kb on + strand, within GFF1048at 363.793 kb on + strand, within GFF1048at 363.794 kb on - strand, within GFF1048at 363.794 kb on - strand, within GFF1048at 363.794 kb on - strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.919 kb on + strand, within GFF1048at 363.920 kb on - strand, within GFF1048at 363.920 kb on - strand, within GFF1048at 363.920 kb on - strand, within GFF1048at 363.920 kb on - strand, within GFF1048at 363.920 kb on - strand, within GFF1048at 363.920 kb on - strand, within GFF1048at 364.114 kb on + strand, within GFF1048at 364.115 kb on - strand, within GFF1048at 364.115 kb on - strand, within GFF1048at 364.115 kb on - strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.132 kb on + strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.133 kb on - strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.135 kb on + strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.136 kb on - strand, within GFF1048at 364.332 kb on + strand, within GFF1048at 364.332 kb on + strand, within GFF1048at 364.332 kb on + strand, within GFF1048at 364.333 kb on - strand, within GFF1048at 364.333 kb on - strand, within GFF1048at 364.333 kb on - strand, within GFF1048at 364.381 kb on + strand, within GFF1048at 364.381 kb on + strand, within GFF1048at 364.381 kb on + strand, within GFF1048at 364.382 kb on - strand, within GFF1048at 364.382 kb on - strand, within GFF1048at 364.382 kb on - strand, within GFF1048at 364.382 kb on - strand, within GFF1048at 364.699 kb on + strandat 364.699 kb on + strandat 364.700 kb on - strandat 364.771 kb on + strandat 364.771 kb on + strandat 364.772 kb on - strandat 364.772 kb on - strandat 364.772 kb on - strandat 364.772 kb on - strandat 364.772 kb on - strandat 364.895 kb on - strand, within GFF1049at 365.077 kb on + strand, within GFF1049at 365.077 kb on + strand, within GFF1049at 365.078 kb on - strand, within GFF1049at 365.078 kb on - strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.098 kb on + strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.099 kb on - strand, within GFF1049at 365.296 kb on + strand, within GFF1049at 365.296 kb on + strand, within GFF1049at 365.296 kb on + strand, within GFF1049at 365.297 kb on - strand, within GFF1049at 365.392 kb on + strand, within GFF1049at 365.392 kb on + strand, within GFF1049at 365.392 kb on + strand, within GFF1049at 365.393 kb on - strand, within GFF1049at 365.393 kb on - strand, within GFF1049at 365.927 kb on - strandat 366.797 kb on + strandat 366.798 kb on - strandat 366.841 kb on + strand, within GFF1051at 366.842 kb on - strand, within GFF1051

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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363,793 + GFF1048 0.33 -0.9
363,793 + GFF1048 0.33 -1.2
363,793 + GFF1048 0.33 +1.1
363,793 + GFF1048 0.33 +1.0
363,793 + GFF1048 0.33 -0.7
363,793 + GFF1048 0.33 +0.5
363,794 - GFF1048 0.34 -0.9
363,794 - GFF1048 0.34 -0.7
363,794 - GFF1048 0.34 +0.6
363,919 + GFF1048 0.43 -0.0
363,919 + GFF1048 0.43 -0.5
363,919 + GFF1048 0.43 +0.2
363,919 + GFF1048 0.43 -1.1
363,919 + GFF1048 0.43 +0.3
363,919 + GFF1048 0.43 +0.3
363,919 + GFF1048 0.43 -0.3
363,919 + GFF1048 0.43 -1.6
363,919 + GFF1048 0.43 +1.0
363,920 - GFF1048 0.43 +1.0
363,920 - GFF1048 0.43 -0.0
363,920 - GFF1048 0.43 +0.2
363,920 - GFF1048 0.43 +0.4
363,920 - GFF1048 0.43 -1.7
363,920 - GFF1048 0.43 -0.4
364,114 + GFF1048 0.59 +0.3
364,115 - GFF1048 0.59 +2.0
364,115 - GFF1048 0.59 +0.5
364,115 - GFF1048 0.59 -0.3
364,132 + GFF1048 0.60 -0.5
364,132 + GFF1048 0.60 -1.2
364,132 + GFF1048 0.60 -1.0
364,132 + GFF1048 0.60 -1.0
364,132 + GFF1048 0.60 +0.3
364,132 + GFF1048 0.60 +0.1
364,132 + GFF1048 0.60 +0.1
364,132 + GFF1048 0.60 -0.0
364,133 - GFF1048 0.60 -0.4
364,133 - GFF1048 0.60 -1.7
364,133 - GFF1048 0.60 -0.0
364,133 - GFF1048 0.60 -1.0
364,133 - GFF1048 0.60 -0.9
364,133 - GFF1048 0.60 -0.3
364,133 - GFF1048 0.60 -0.7
364,135 + GFF1048 0.60 -0.9
364,135 + GFF1048 0.60 +0.4
364,135 + GFF1048 0.60 -0.5
364,135 + GFF1048 0.60 -0.5
364,135 + GFF1048 0.60 -2.0
364,135 + GFF1048 0.60 -0.2
364,135 + GFF1048 0.60 +1.0
364,135 + GFF1048 0.60 -0.3
364,135 + GFF1048 0.60 -0.8
364,135 + GFF1048 0.60 +0.4
364,135 + GFF1048 0.60 -1.2
364,135 + GFF1048 0.60 +1.6
364,136 - GFF1048 0.60 -0.3
364,136 - GFF1048 0.60 +1.5
364,136 - GFF1048 0.60 +0.0
364,136 - GFF1048 0.60 +0.2
364,136 - GFF1048 0.60 -0.3
364,136 - GFF1048 0.60 +0.8
364,136 - GFF1048 0.60 +1.0
364,136 - GFF1048 0.60 -1.1
364,136 - GFF1048 0.60 -0.2
364,136 - GFF1048 0.60 +0.2
364,136 - GFF1048 0.60 +0.0
364,136 - GFF1048 0.60 -0.4
364,136 - GFF1048 0.60 +0.6
364,136 - GFF1048 0.60 -0.2
364,136 - GFF1048 0.60 -0.9
364,136 - GFF1048 0.60 -0.2
364,332 + GFF1048 0.76 -0.4
364,332 + GFF1048 0.76 +0.3
364,332 + GFF1048 0.76 -0.0
364,333 - GFF1048 0.76 +0.1
364,333 - GFF1048 0.76 +1.0
364,333 - GFF1048 0.76 -0.2
364,381 + GFF1048 0.80 -0.6
364,381 + GFF1048 0.80 -0.2
364,381 + GFF1048 0.80 -0.4
364,382 - GFF1048 0.80 +0.4
364,382 - GFF1048 0.80 +3.0
364,382 - GFF1048 0.80 +0.5
364,382 - GFF1048 0.80 -0.5
364,699 + +1.0
364,699 + +0.4
364,700 - -0.9
364,771 + -0.4
364,771 + -0.4
364,772 - -0.5
364,772 - +0.7
364,772 - +1.0
364,772 - -0.5
364,772 - +0.5
364,895 - GFF1049 0.16 -0.4
365,077 + GFF1049 0.32 -0.0
365,077 + GFF1049 0.32 -0.1
365,078 - GFF1049 0.32 -0.3
365,078 - GFF1049 0.32 -0.3
365,098 + GFF1049 0.34 -0.2
365,098 + GFF1049 0.34 +1.0
365,098 + GFF1049 0.34 +0.2
365,098 + GFF1049 0.34 +0.8
365,098 + GFF1049 0.34 -0.0
365,098 + GFF1049 0.34 -1.2
365,098 + GFF1049 0.34 -0.0
365,098 + GFF1049 0.34 -0.6
365,098 + GFF1049 0.34 +0.1
365,098 + GFF1049 0.34 -0.0
365,098 + GFF1049 0.34 -0.1
365,098 + GFF1049 0.34 -0.1
365,098 + GFF1049 0.34 -0.2
365,098 + GFF1049 0.34 -0.9
365,098 + GFF1049 0.34 -0.5
365,098 + GFF1049 0.34 -1.3
365,098 + GFF1049 0.34 +0.6
365,098 + GFF1049 0.34 -0.1
365,098 + GFF1049 0.34 -0.6
365,099 - GFF1049 0.34 -0.0
365,099 - GFF1049 0.34 -0.5
365,099 - GFF1049 0.34 -0.7
365,099 - GFF1049 0.34 -0.3
365,099 - GFF1049 0.34 -0.3
365,099 - GFF1049 0.34 -0.9
365,099 - GFF1049 0.34 +0.2
365,099 - GFF1049 0.34 -0.4
365,099 - GFF1049 0.34 +0.2
365,099 - GFF1049 0.34 -1.2
365,099 - GFF1049 0.34 -0.0
365,099 - GFF1049 0.34 -1.2
365,099 - GFF1049 0.34 +0.4
365,099 - GFF1049 0.34 -2.0
365,099 - GFF1049 0.34 -1.2
365,099 - GFF1049 0.34 +0.5
365,099 - GFF1049 0.34 -0.0
365,099 - GFF1049 0.34 +1.6
365,099 - GFF1049 0.34 -1.7
365,099 - GFF1049 0.34 -0.9
365,099 - GFF1049 0.34 +0.1
365,296 + GFF1049 0.51 +0.0
365,296 + GFF1049 0.51 +0.1
365,296 + GFF1049 0.51 -0.0
365,297 - GFF1049 0.51 +1.4
365,392 + GFF1049 0.60 +2.4
365,392 + GFF1049 0.60 +1.1
365,392 + GFF1049 0.60 -0.5
365,393 - GFF1049 0.60 +0.1
365,393 - GFF1049 0.60 +4.0
365,927 - -0.3
366,797 + -1.8
366,798 - -0.7
366,841 + GFF1051 0.36 -1.8
366,842 - GFF1051 0.37 +0.6

Or see this region's nucleotide sequence