Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1012 and GFF1013 are separated by 114 nucleotides GFF1013 and GFF1014 are separated by 58 nucleotides GFF1014 and GFF1015 are separated by 36 nucleotides GFF1015 and GFF1016 are separated by 68 nucleotides
GFF1012 - Cystathionine beta-lyase (EC 4.4.1.8), at 331,431 to 332,651
GFF1012
GFF1013 - hypothetical protein, at 332,766 to 332,969
GFF1013
GFF1014 - Arylesterase precursor (EC 3.1.1.2), at 333,028 to 333,666
GFF1014
GFF1015 - ABC-type antimicrobial peptide transport system, ATPase component, at 333,703 to 334,413
GFF1015
GFF1016 - no description, at 334,482 to 334,961
GFF1016
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.089 kb on - strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.089 kb on - strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.247 kb on + strand, within GFF1012 at 332.248 kb on - strand, within GFF1012 at 332.248 kb on - strand, within GFF1012 at 332.378 kb on + strand, within GFF1012 at 332.379 kb on - strand, within GFF1012 at 332.379 kb on - strand, within GFF1012 at 332.517 kb on + strand, within GFF1012 at 332.517 kb on + strand, within GFF1012 at 332.518 kb on - strand, within GFF1012 at 332.518 kb on - strand, within GFF1012 at 332.650 kb on - strand at 332.650 kb on - strand at 332.650 kb on - strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.716 kb on + strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.717 kb on - strand at 332.721 kb on + strand at 332.721 kb on + strand at 332.721 kb on + strand at 332.721 kb on + strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.722 kb on - strand at 332.781 kb on + strand at 332.781 kb on + strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.782 kb on - strand at 332.787 kb on + strand, within GFF1013 at 332.788 kb on - strand, within GFF1013 at 333.231 kb on - strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.242 kb on + strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.243 kb on - strand, within GFF1014 at 333.261 kb on + strand, within GFF1014 at 333.518 kb on - strand, within GFF1014 at 333.545 kb on + strand, within GFF1014 at 333.545 kb on + strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.546 kb on - strand, within GFF1014 at 333.669 kb on + strand at 333.669 kb on + strand at 333.669 kb on + strand at 333.669 kb on + strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 333.670 kb on - strand at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.299 kb on + strand, within GFF1015 at 334.300 kb on - strand, within GFF1015 at 334.300 kb on - strand, within GFF1015 at 334.383 kb on + strand at 334.383 kb on + strand at 334.383 kb on + strand at 334.383 kb on + strand at 334.400 kb on + strand at 334.423 kb on + strand at 334.428 kb on + strand at 334.448 kb on + strand at 334.449 kb on - strand at 334.452 kb on + strand at 334.452 kb on + strand at 334.459 kb on + strand at 334.459 kb on + strand at 334.459 kb on + strand at 334.460 kb on - strand at 334.460 kb on - strand at 334.461 kb on + strand at 334.461 kb on + strand at 334.461 kb on + strand at 334.462 kb on - strand at 334.465 kb on + strand at 334.465 kb on + strand at 334.465 kb on + strand at 334.466 kb on - strand at 334.466 kb on - strand at 334.605 kb on + strand, within GFF1016 at 334.606 kb on - strand, within GFF1016 at 334.606 kb on - strand, within GFF1016
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 332,089 - GFF1012 0.54 +0.7 332,089 - GFF1012 0.54 -0.4 332,089 - GFF1012 0.54 +0.0 332,089 - GFF1012 0.54 -0.9 332,247 + GFF1012 0.67 -1.1 332,247 + GFF1012 0.67 +0.2 332,247 + GFF1012 0.67 -0.8 332,247 + GFF1012 0.67 -0.4 332,248 - GFF1012 0.67 -1.7 332,248 - GFF1012 0.67 -1.2 332,378 + GFF1012 0.78 -0.1 332,379 - GFF1012 0.78 +0.7 332,379 - GFF1012 0.78 +0.0 332,517 + GFF1012 0.89 -1.0 332,517 + GFF1012 0.89 -1.0 332,518 - GFF1012 0.89 -0.5 332,518 - GFF1012 0.89 -1.9 332,650 - -1.3 332,650 - -1.2 332,650 - +0.4 332,716 + -0.0 332,716 + +0.1 332,716 + -0.5 332,716 + +0.6 332,716 + -0.2 332,716 + -1.2 332,716 + -1.2 332,717 - -0.1 332,717 - -1.5 332,717 - +1.2 332,717 - +0.4 332,717 - +1.1 332,717 - +0.6 332,717 - +0.3 332,721 + +1.2 332,721 + -1.4 332,721 + -0.5 332,721 + -0.2 332,722 - +0.4 332,722 - -0.9 332,722 - -0.7 332,722 - -0.2 332,722 - -0.7 332,722 - +0.6 332,722 - -0.4 332,781 + -0.4 332,781 + -1.1 332,782 - -0.2 332,782 - +0.3 332,782 - -0.9 332,782 - +0.2 332,782 - -0.5 332,782 - -0.7 332,782 - +1.0 332,787 + GFF1013 0.10 -0.5 332,788 - GFF1013 0.11 +0.5 333,231 - GFF1014 0.32 -0.3 333,242 + GFF1014 0.33 -0.8 333,242 + GFF1014 0.33 -0.4 333,242 + GFF1014 0.33 +0.6 333,242 + GFF1014 0.33 -0.4 333,242 + GFF1014 0.33 -1.7 333,242 + GFF1014 0.33 -0.1 333,243 - GFF1014 0.34 -0.5 333,243 - GFF1014 0.34 +0.2 333,243 - GFF1014 0.34 -1.5 333,243 - GFF1014 0.34 -1.0 333,243 - GFF1014 0.34 -0.6 333,261 + GFF1014 0.36 -0.4 333,518 - GFF1014 0.77 -0.7 333,545 + GFF1014 0.81 -0.7 333,545 + GFF1014 0.81 -0.6 333,546 - GFF1014 0.81 -0.3 333,546 - GFF1014 0.81 -0.2 333,546 - GFF1014 0.81 +1.1 333,546 - GFF1014 0.81 -1.0 333,546 - GFF1014 0.81 -0.4 333,669 + -1.7 333,669 + -0.4 333,669 + +0.1 333,669 + +0.3 333,670 - -1.3 333,670 - -0.4 333,670 - +0.2 333,670 - -0.9 333,670 - -0.4 333,670 - -0.7 333,670 - -1.1 333,670 - +0.3 333,670 - +0.5 333,670 - +0.0 334,299 + GFF1015 0.84 -1.2 334,299 + GFF1015 0.84 -0.9 334,299 + GFF1015 0.84 -1.4 334,299 + GFF1015 0.84 -0.4 334,299 + GFF1015 0.84 -0.9 334,299 + GFF1015 0.84 +0.2 334,299 + GFF1015 0.84 +0.3 334,299 + GFF1015 0.84 +0.5 334,299 + GFF1015 0.84 -0.5 334,299 + GFF1015 0.84 -0.2 334,300 - GFF1015 0.84 -0.9 334,300 - GFF1015 0.84 -1.5 334,383 + -0.3 334,383 + -0.7 334,383 + -0.8 334,383 + -1.4 334,400 + +0.4 334,423 + +0.3 334,428 + -0.7 334,448 + +0.0 334,449 - -0.8 334,452 + -1.8 334,452 + -1.4 334,459 + -2.0 334,459 + -1.2 334,459 + +0.1 334,460 - -0.3 334,460 - -0.8 334,461 + -0.7 334,461 + -1.5 334,461 + +0.1 334,462 - -0.5 334,465 + +0.2 334,465 + -0.2 334,465 + -1.0 334,466 - -0.0 334,466 - -0.3 334,605 + GFF1016 0.26 -0.5 334,606 - GFF1016 0.26 +2.4 334,606 - GFF1016 0.26 -0.4
Or see this region's nucleotide sequence