Strain Fitness in Variovorax sp. SCN45 around GFF911

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF910 and GFF911 are separated by 39 nucleotidesGFF911 and GFF912 are separated by 14 nucleotides GFF910 - hypothetical protein, at 220,626 to 222,359 GFF910 GFF911 - KEGG: transcriptional regulator, at 222,399 to 223,046 GFF911 GFF912 - putative acetyl esterase, at 223,061 to 224,053 GFF912 Position (kb) 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2 3at 221.584 kb on + strand, within GFF910at 221.585 kb on - strand, within GFF910at 221.585 kb on - strand, within GFF910at 221.626 kb on + strand, within GFF910at 221.626 kb on + strand, within GFF910at 221.626 kb on + strand, within GFF910at 221.627 kb on - strand, within GFF910at 221.627 kb on - strand, within GFF910at 221.920 kb on + strand, within GFF910at 221.920 kb on + strand, within GFF910at 222.523 kb on + strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.524 kb on - strand, within GFF911at 222.589 kb on + strand, within GFF911at 222.589 kb on + strand, within GFF911at 222.629 kb on - strand, within GFF911at 222.629 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.740 kb on - strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.772 kb on + strand, within GFF911at 222.773 kb on - strand, within GFF911at 222.773 kb on - strand, within GFF911at 222.773 kb on - strand, within GFF911at 223.027 kb on + strandat 223.027 kb on + strandat 223.027 kb on + strandat 223.027 kb on + strandat 223.028 kb on - strandat 223.028 kb on - strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.042 kb on + strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.043 kb on - strandat 223.078 kb on + strandat 223.079 kb on - strandat 223.091 kb on + strandat 223.091 kb on + strandat 223.092 kb on - strandat 223.351 kb on - strand, within GFF912at 223.434 kb on + strand, within GFF912at 223.435 kb on - strand, within GFF912at 223.435 kb on - strand, within GFF912at 223.443 kb on + strand, within GFF912at 223.444 kb on - strand, within GFF912at 223.633 kb on + strand, within GFF912at 223.653 kb on + strand, within GFF912at 223.653 kb on + strand, within GFF912at 223.654 kb on - strand, within GFF912at 223.654 kb on - strand, within GFF912at 223.755 kb on + strand, within GFF912at 223.756 kb on - strand, within GFF912at 223.756 kb on - strand, within GFF912at 223.791 kb on + strand, within GFF912at 223.792 kb on - strand, within GFF912at 223.792 kb on - strand, within GFF912at 223.920 kb on + strand, within GFF912at 224.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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221,584 + GFF910 0.55 -1.1
221,585 - GFF910 0.55 -0.3
221,585 - GFF910 0.55 -0.9
221,626 + GFF910 0.58 -0.8
221,626 + GFF910 0.58 +0.1
221,626 + GFF910 0.58 -0.3
221,627 - GFF910 0.58 -1.3
221,627 - GFF910 0.58 +1.7
221,920 + GFF910 0.75 -0.9
221,920 + GFF910 0.75 -1.0
222,523 + GFF911 0.19 -0.2
222,524 - GFF911 0.19 -0.3
222,524 - GFF911 0.19 +3.3
222,524 - GFF911 0.19 +1.4
222,524 - GFF911 0.19 -0.0
222,524 - GFF911 0.19 +0.1
222,589 + GFF911 0.29 +0.5
222,589 + GFF911 0.29 -0.6
222,629 - GFF911 0.35 +0.4
222,629 - GFF911 0.35 -0.9
222,740 - GFF911 0.53 +0.2
222,740 - GFF911 0.53 +0.1
222,740 - GFF911 0.53 +0.7
222,740 - GFF911 0.53 -0.9
222,740 - GFF911 0.53 -1.7
222,772 + GFF911 0.58 +0.0
222,772 + GFF911 0.58 -1.5
222,772 + GFF911 0.58 +0.1
222,772 + GFF911 0.58 +0.1
222,773 - GFF911 0.58 +1.5
222,773 - GFF911 0.58 +0.7
222,773 - GFF911 0.58 +0.5
223,027 + +0.4
223,027 + -0.3
223,027 + -0.6
223,027 + +0.7
223,028 - +0.3
223,028 - -0.9
223,042 + +1.0
223,042 + +0.5
223,042 + -0.5
223,042 + -0.5
223,042 + +0.7
223,043 - -1.1
223,043 - +0.5
223,043 - -0.3
223,043 - -0.1
223,043 - -0.5
223,043 - -0.7
223,078 + +0.1
223,079 - +0.1
223,091 + -0.1
223,091 + +0.5
223,092 - -0.3
223,351 - GFF912 0.29 +0.7
223,434 + GFF912 0.38 -0.9
223,435 - GFF912 0.38 +0.4
223,435 - GFF912 0.38 -0.6
223,443 + GFF912 0.38 +0.5
223,444 - GFF912 0.39 -0.1
223,633 + GFF912 0.58 +0.7
223,653 + GFF912 0.60 +1.0
223,653 + GFF912 0.60 -0.5
223,654 - GFF912 0.60 +3.7
223,654 - GFF912 0.60 -0.7
223,755 + GFF912 0.70 +0.4
223,756 - GFF912 0.70 -1.5
223,756 - GFF912 0.70 +0.1
223,791 + GFF912 0.74 -1.5
223,792 - GFF912 0.74 -0.5
223,792 - GFF912 0.74 +0.6
223,920 + GFF912 0.87 -2.2
224,029 - +0.3

Or see this region's nucleotide sequence