Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF870 and GFF871 are separated by 20 nucleotides GFF871 and GFF872 overlap by 4 nucleotides GFF872 and GFF873 overlap by 4 nucleotides
GFF870 - TonB-dependent receptor, at 178,388 to 180,517
GFF870
GFF871 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 180,538 to 181,431
GFF871
GFF872 - Hemin ABC transporter, permease protein, at 181,428 to 182,420
GFF872
GFF873 - KEGG: iron complex transport system ATP-binding protein , at 182,417 to 183,151
GFF873
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1
2 at 179.538 kb on - strand, within GFF870 at 179.538 kb on - strand, within GFF870 at 179.538 kb on - strand, within GFF870 at 179.538 kb on - strand, within GFF870 at 179.630 kb on + strand, within GFF870 at 179.630 kb on + strand, within GFF870 at 179.631 kb on - strand, within GFF870 at 180.113 kb on + strand, within GFF870 at 180.122 kb on + strand, within GFF870 at 180.122 kb on + strand, within GFF870 at 180.122 kb on + strand, within GFF870 at 180.161 kb on + strand, within GFF870 at 180.161 kb on + strand, within GFF870 at 180.161 kb on + strand, within GFF870 at 180.162 kb on - strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.287 kb on + strand, within GFF870 at 180.288 kb on - strand, within GFF870 at 180.288 kb on - strand, within GFF870 at 180.288 kb on - strand, within GFF870 at 180.371 kb on + strand at 180.372 kb on - strand at 180.372 kb on - strand at 180.372 kb on - strand at 180.428 kb on + strand at 180.428 kb on + strand at 180.429 kb on - strand at 180.429 kb on - strand at 180.429 kb on - strand at 180.429 kb on - strand at 180.431 kb on + strand at 180.431 kb on + strand at 180.431 kb on + strand at 180.432 kb on - strand at 180.506 kb on + strand at 180.507 kb on - strand at 180.507 kb on - strand at 180.802 kb on + strand, within GFF871 at 180.863 kb on - strand, within GFF871 at 181.075 kb on + strand, within GFF871 at 181.075 kb on + strand, within GFF871 at 181.076 kb on - strand, within GFF871 at 181.132 kb on + strand, within GFF871 at 181.132 kb on + strand, within GFF871 at 181.396 kb on + strand at 181.396 kb on + strand at 181.688 kb on + strand, within GFF872 at 181.689 kb on + strand, within GFF872 at 181.690 kb on - strand, within GFF872 at 181.929 kb on + strand, within GFF872
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 179,538 - GFF870 0.54 +0.8 179,538 - GFF870 0.54 +0.2 179,538 - GFF870 0.54 +0.6 179,538 - GFF870 0.54 +0.0 179,630 + GFF870 0.58 +0.4 179,630 + GFF870 0.58 -0.0 179,631 - GFF870 0.58 +0.2 180,113 + GFF870 0.81 -0.1 180,122 + GFF870 0.81 -1.3 180,122 + GFF870 0.81 +0.8 180,122 + GFF870 0.81 +0.7 180,161 + GFF870 0.83 +0.3 180,161 + GFF870 0.83 +0.6 180,161 + GFF870 0.83 -0.8 180,162 - GFF870 0.83 -0.1 180,287 + GFF870 0.89 -0.6 180,287 + GFF870 0.89 +0.9 180,287 + GFF870 0.89 +0.1 180,287 + GFF870 0.89 +0.4 180,288 - GFF870 0.89 +1.0 180,288 - GFF870 0.89 -0.6 180,288 - GFF870 0.89 -0.8 180,371 + +0.5 180,372 - -0.8 180,372 - +2.1 180,372 - -0.8 180,428 + -0.2 180,428 + -0.1 180,429 - +0.5 180,429 - -0.2 180,429 - +0.4 180,429 - -0.3 180,431 + +0.4 180,431 + +0.8 180,431 + -0.4 180,432 - +1.3 180,506 + -0.6 180,507 - +0.8 180,507 - -0.3 180,802 + GFF871 0.30 +0.2 180,863 - GFF871 0.36 +0.7 181,075 + GFF871 0.60 +0.5 181,075 + GFF871 0.60 +1.3 181,076 - GFF871 0.60 -0.8 181,132 + GFF871 0.66 -0.1 181,132 + GFF871 0.66 +0.7 181,396 + +0.2 181,396 + -0.2 181,688 + GFF872 0.26 +0.3 181,689 + GFF872 0.26 +0.7 181,690 - GFF872 0.26 +0.1 181,929 + GFF872 0.50 -0.1
Or see this region's nucleotide sequence