Strain Fitness in Variovorax sp. SCN45 around GFF870

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF869 and GFF870 are separated by 496 nucleotidesGFF870 and GFF871 are separated by 20 nucleotidesGFF871 and GFF872 overlap by 4 nucleotides GFF869 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 177,238 to 177,891 GFF869 GFF870 - TonB-dependent receptor, at 178,388 to 180,517 GFF870 GFF871 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 180,538 to 181,431 GFF871 GFF872 - Hemin ABC transporter, permease protein, at 181,428 to 182,420 GFF872 Position (kb) 178 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 177.418 kb on + strand, within GFF869at 177.419 kb on - strand, within GFF869at 177.421 kb on + strand, within GFF869at 177.421 kb on + strand, within GFF869at 177.421 kb on + strand, within GFF869at 177.422 kb on - strand, within GFF869at 177.422 kb on - strand, within GFF869at 177.422 kb on - strand, within GFF869at 177.424 kb on + strand, within GFF869at 177.424 kb on + strand, within GFF869at 177.424 kb on + strand, within GFF869at 177.424 kb on + strand, within GFF869at 177.425 kb on - strand, within GFF869at 177.425 kb on - strand, within GFF869at 177.449 kb on - strand, within GFF869at 177.449 kb on - strand, within GFF869at 177.449 kb on - strand, within GFF869at 177.542 kb on - strand, within GFF869at 177.767 kb on + strand, within GFF869at 177.770 kb on - strand, within GFF869at 177.770 kb on - strand, within GFF869at 177.778 kb on + strand, within GFF869at 177.922 kb on + strandat 177.925 kb on - strandat 177.955 kb on + strandat 178.010 kb on + strandat 178.010 kb on + strandat 178.011 kb on - strandat 178.026 kb on - strandat 178.571 kb on + strandat 178.572 kb on - strandat 178.670 kb on + strand, within GFF870at 178.670 kb on + strand, within GFF870at 178.670 kb on + strand, within GFF870at 178.671 kb on - strand, within GFF870at 178.671 kb on - strand, within GFF870at 178.673 kb on + strand, within GFF870at 178.673 kb on + strand, within GFF870at 178.674 kb on - strand, within GFF870at 178.674 kb on - strand, within GFF870at 178.979 kb on + strand, within GFF870at 178.979 kb on + strand, within GFF870at 178.980 kb on - strand, within GFF870at 178.980 kb on - strand, within GFF870at 178.980 kb on - strand, within GFF870at 179.003 kb on + strand, within GFF870at 179.004 kb on - strand, within GFF870at 179.004 kb on - strand, within GFF870at 179.102 kb on + strand, within GFF870at 179.102 kb on + strand, within GFF870at 179.103 kb on - strand, within GFF870at 179.189 kb on + strand, within GFF870at 179.189 kb on + strand, within GFF870at 179.189 kb on + strand, within GFF870at 179.190 kb on - strand, within GFF870at 179.207 kb on + strand, within GFF870at 179.208 kb on - strand, within GFF870at 179.300 kb on + strand, within GFF870at 179.363 kb on + strand, within GFF870at 179.377 kb on + strand, within GFF870at 179.378 kb on - strand, within GFF870at 179.537 kb on + strand, within GFF870at 179.538 kb on - strand, within GFF870at 179.538 kb on - strand, within GFF870at 179.538 kb on - strand, within GFF870at 179.538 kb on - strand, within GFF870at 179.630 kb on + strand, within GFF870at 179.630 kb on + strand, within GFF870at 179.631 kb on - strand, within GFF870at 180.113 kb on + strand, within GFF870at 180.122 kb on + strand, within GFF870at 180.122 kb on + strand, within GFF870at 180.122 kb on + strand, within GFF870at 180.161 kb on + strand, within GFF870at 180.161 kb on + strand, within GFF870at 180.161 kb on + strand, within GFF870at 180.162 kb on - strand, within GFF870at 180.287 kb on + strand, within GFF870at 180.287 kb on + strand, within GFF870at 180.287 kb on + strand, within GFF870at 180.287 kb on + strand, within GFF870at 180.288 kb on - strand, within GFF870at 180.288 kb on - strand, within GFF870at 180.288 kb on - strand, within GFF870at 180.371 kb on + strandat 180.372 kb on - strandat 180.372 kb on - strandat 180.372 kb on - strandat 180.428 kb on + strandat 180.428 kb on + strandat 180.429 kb on - strandat 180.429 kb on - strandat 180.429 kb on - strandat 180.429 kb on - strandat 180.431 kb on + strandat 180.431 kb on + strandat 180.431 kb on + strandat 180.432 kb on - strandat 180.506 kb on + strandat 180.507 kb on - strandat 180.507 kb on - strandat 180.802 kb on + strand, within GFF871at 180.863 kb on - strand, within GFF871at 181.075 kb on + strand, within GFF871at 181.075 kb on + strand, within GFF871at 181.076 kb on - strand, within GFF871at 181.132 kb on + strand, within GFF871at 181.132 kb on + strand, within GFF871at 181.396 kb on + strandat 181.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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177,418 + GFF869 0.28 +0.2
177,419 - GFF869 0.28 +0.7
177,421 + GFF869 0.28 +0.2
177,421 + GFF869 0.28 -0.4
177,421 + GFF869 0.28 -1.4
177,422 - GFF869 0.28 -0.6
177,422 - GFF869 0.28 +0.7
177,422 - GFF869 0.28 -0.4
177,424 + GFF869 0.28 -1.0
177,424 + GFF869 0.28 +0.1
177,424 + GFF869 0.28 -0.5
177,424 + GFF869 0.28 -0.6
177,425 - GFF869 0.29 +0.5
177,425 - GFF869 0.29 -0.5
177,449 - GFF869 0.32 -0.4
177,449 - GFF869 0.32 -0.6
177,449 - GFF869 0.32 -1.3
177,542 - GFF869 0.46 -1.2
177,767 + GFF869 0.81 +0.7
177,770 - GFF869 0.81 +1.7
177,770 - GFF869 0.81 -0.7
177,778 + GFF869 0.83 -0.3
177,922 + +0.1
177,925 - +0.2
177,955 + -0.5
178,010 + -1.3
178,010 + +0.4
178,011 - -0.0
178,026 - +2.0
178,571 + +0.2
178,572 - +1.1
178,670 + GFF870 0.13 -0.4
178,670 + GFF870 0.13 +1.7
178,670 + GFF870 0.13 +0.8
178,671 - GFF870 0.13 -0.0
178,671 - GFF870 0.13 -0.0
178,673 + GFF870 0.13 -0.2
178,673 + GFF870 0.13 -2.0
178,674 - GFF870 0.13 +1.2
178,674 - GFF870 0.13 +0.1
178,979 + GFF870 0.28 -0.2
178,979 + GFF870 0.28 +0.0
178,980 - GFF870 0.28 -0.8
178,980 - GFF870 0.28 -0.2
178,980 - GFF870 0.28 -0.6
179,003 + GFF870 0.29 +0.1
179,004 - GFF870 0.29 -2.5
179,004 - GFF870 0.29 -1.1
179,102 + GFF870 0.34 -0.6
179,102 + GFF870 0.34 +0.2
179,103 - GFF870 0.34 -0.1
179,189 + GFF870 0.38 +1.4
179,189 + GFF870 0.38 -1.1
179,189 + GFF870 0.38 -1.4
179,190 - GFF870 0.38 +0.1
179,207 + GFF870 0.38 +0.6
179,208 - GFF870 0.38 +0.5
179,300 + GFF870 0.43 +1.4
179,363 + GFF870 0.46 -0.3
179,377 + GFF870 0.46 -0.3
179,378 - GFF870 0.46 -1.9
179,537 + GFF870 0.54 +0.8
179,538 - GFF870 0.54 +0.8
179,538 - GFF870 0.54 +0.2
179,538 - GFF870 0.54 +0.6
179,538 - GFF870 0.54 +0.0
179,630 + GFF870 0.58 +0.4
179,630 + GFF870 0.58 -0.0
179,631 - GFF870 0.58 +0.2
180,113 + GFF870 0.81 -0.1
180,122 + GFF870 0.81 -1.3
180,122 + GFF870 0.81 +0.8
180,122 + GFF870 0.81 +0.7
180,161 + GFF870 0.83 +0.3
180,161 + GFF870 0.83 +0.6
180,161 + GFF870 0.83 -0.8
180,162 - GFF870 0.83 -0.1
180,287 + GFF870 0.89 -0.6
180,287 + GFF870 0.89 +0.9
180,287 + GFF870 0.89 +0.1
180,287 + GFF870 0.89 +0.4
180,288 - GFF870 0.89 +1.0
180,288 - GFF870 0.89 -0.6
180,288 - GFF870 0.89 -0.8
180,371 + +0.5
180,372 - -0.8
180,372 - +2.1
180,372 - -0.8
180,428 + -0.2
180,428 + -0.1
180,429 - +0.5
180,429 - -0.2
180,429 - +0.4
180,429 - -0.3
180,431 + +0.4
180,431 + +0.8
180,431 + -0.4
180,432 - +1.3
180,506 + -0.6
180,507 - +0.8
180,507 - -0.3
180,802 + GFF871 0.30 +0.2
180,863 - GFF871 0.36 +0.7
181,075 + GFF871 0.60 +0.5
181,075 + GFF871 0.60 +1.3
181,076 - GFF871 0.60 -0.8
181,132 + GFF871 0.66 -0.1
181,132 + GFF871 0.66 +0.7
181,396 + +0.2
181,396 + -0.2

Or see this region's nucleotide sequence