Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF843 and GFF844 are separated by 6 nucleotides GFF844 and GFF845 are separated by 90 nucleotides GFF845 and GFF846 overlap by 4 nucleotides
GFF843 - no description, at 152,121 to 153,215
GFF843
GFF844 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 153,222 to 154,661
GFF844
GFF845 - dTDP-glucose 4,6-dehydratase, at 154,752 to 155,495
GFF845
GFF846 - hypothetical protein, at 155,492 to 156,025
GFF846
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1 at 152.382 kb on + strand, within GFF843 at 152.382 kb on + strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.843 kb on + strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 153.075 kb on + strand, within GFF843 at 153.112 kb on - strand at 153.514 kb on + strand, within GFF844 at 153.712 kb on + strand, within GFF844 at 153.713 kb on - strand, within GFF844 at 153.713 kb on - strand, within GFF844 at 153.713 kb on - strand, within GFF844 at 153.788 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.438 kb on + strand, within GFF844 at 154.438 kb on + strand, within GFF844 at 154.462 kb on + strand, within GFF844 at 154.463 kb on - strand, within GFF844 at 154.579 kb on + strand at 154.580 kb on - strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.765 kb on + strand at 154.765 kb on + strand at 154.830 kb on + strand, within GFF845 at 155.130 kb on + strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 155.131 kb on - strand, within GFF845
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 152,382 + GFF843 0.24 +0.4 152,382 + GFF843 0.24 +0.4 152,383 - GFF843 0.24 -0.2 152,383 - GFF843 0.24 +0.7 152,581 + GFF843 0.42 -0.5 152,581 + GFF843 0.42 +0.7 152,843 + GFF843 0.66 +0.4 152,845 - GFF843 0.66 -0.3 152,845 - GFF843 0.66 -0.1 152,845 - GFF843 0.66 -0.9 152,845 - GFF843 0.66 -0.0 152,845 - GFF843 0.66 -1.2 153,075 + GFF843 0.87 -0.9 153,112 - -1.8 153,514 + GFF844 0.20 -1.5 153,712 + GFF844 0.34 -0.4 153,713 - GFF844 0.34 +0.2 153,713 - GFF844 0.34 -0.2 153,713 - GFF844 0.34 -0.6 153,788 - GFF844 0.39 -0.2 154,202 - GFF844 0.68 -0.7 154,202 - GFF844 0.68 -0.0 154,202 - GFF844 0.68 -0.9 154,202 - GFF844 0.68 -0.6 154,438 + GFF844 0.84 -0.9 154,438 + GFF844 0.84 +0.2 154,462 + GFF844 0.86 +1.7 154,463 - GFF844 0.86 -0.4 154,579 + -0.0 154,580 - +0.4 154,715 - +0.8 154,715 - +0.7 154,765 + -0.3 154,765 + -0.2 154,830 + GFF845 0.10 -0.5 155,130 + GFF845 0.51 -0.9 155,131 - GFF845 0.51 -0.4 155,131 - GFF845 0.51 +0.5
Or see this region's nucleotide sequence