Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF823 and GFF824 are separated by 5 nucleotides GFF824 and GFF825 are separated by 164 nucleotides GFF825 and GFF826 are separated by 173 nucleotides GFF826 and GFF827 are separated by 200 nucleotides
GFF823 - Inner membrane protein YbaL, KefB/KefC family, at 128,145 to 129,851
GFF823
GFF824 - hypothetical protein, at 129,857 to 130,261
GFF824
GFF825 - no description, at 130,426 to 130,653
GFF825
GFF826 - no description, at 130,827 to 130,979
GFF826
GFF827 - Predicted cobalt transporter CbtC, at 131,180 to 131,857
GFF827
Position (kb) 130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.447 kb on + strand, within GFF823 at 129.448 kb on - strand, within GFF823 at 129.501 kb on + strand, within GFF823 at 129.502 kb on - strand, within GFF823 at 129.502 kb on - strand, within GFF823 at 129.502 kb on - strand, within GFF823 at 129.502 kb on - strand, within GFF823 at 129.976 kb on + strand, within GFF824 at 129.976 kb on + strand, within GFF824 at 129.976 kb on + strand, within GFF824 at 129.977 kb on - strand, within GFF824 at 129.977 kb on - strand, within GFF824 at 130.002 kb on + strand, within GFF824 at 130.002 kb on + strand, within GFF824 at 130.002 kb on + strand, within GFF824 at 130.002 kb on + strand, within GFF824 at 130.003 kb on - strand, within GFF824 at 130.003 kb on - strand, within GFF824 at 130.003 kb on - strand, within GFF824 at 130.107 kb on + strand, within GFF824 at 130.107 kb on + strand, within GFF824 at 130.107 kb on + strand, within GFF824 at 130.107 kb on + strand, within GFF824 at 130.108 kb on - strand, within GFF824 at 130.108 kb on - strand, within GFF824 at 130.108 kb on - strand, within GFF824 at 130.108 kb on - strand, within GFF824 at 130.206 kb on + strand, within GFF824 at 130.207 kb on - strand, within GFF824 at 130.207 kb on - strand, within GFF824 at 130.319 kb on + strand at 130.319 kb on + strand at 130.319 kb on + strand at 130.319 kb on + strand at 130.320 kb on - strand at 130.320 kb on - strand at 130.320 kb on - strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.327 kb on + strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.328 kb on - strand at 130.353 kb on - strand at 130.353 kb on - strand at 130.353 kb on - strand at 130.353 kb on - strand at 130.353 kb on - strand at 130.416 kb on - strand at 130.416 kb on - strand at 130.483 kb on + strand, within GFF825 at 130.483 kb on + strand, within GFF825 at 130.484 kb on - strand, within GFF825 at 130.484 kb on - strand, within GFF825 at 130.484 kb on - strand, within GFF825 at 130.484 kb on - strand, within GFF825 at 130.484 kb on - strand, within GFF825 at 130.537 kb on + strand, within GFF825 at 130.537 kb on + strand, within GFF825 at 130.537 kb on + strand, within GFF825 at 130.537 kb on + strand, within GFF825 at 130.537 kb on + strand, within GFF825 at 130.537 kb on + strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.538 kb on - strand, within GFF825 at 130.567 kb on + strand, within GFF825 at 130.576 kb on + strand, within GFF825 at 130.577 kb on - strand, within GFF825 at 130.577 kb on - strand, within GFF825 at 130.577 kb on - strand, within GFF825 at 130.649 kb on + strand at 130.651 kb on + strand at 130.651 kb on + strand at 130.651 kb on + strand at 130.651 kb on + strand at 130.652 kb on - strand at 130.652 kb on - strand at 130.652 kb on - strand at 130.652 kb on - strand at 130.652 kb on - strand at 130.652 kb on - strand at 130.652 kb on - strand at 130.784 kb on + strand at 130.784 kb on + strand at 130.784 kb on + strand at 130.784 kb on + strand at 130.785 kb on - strand at 130.785 kb on - strand at 130.952 kb on + strand, within GFF826 at 131.078 kb on + strand at 131.078 kb on + strand at 131.078 kb on + strand at 131.079 kb on - strand at 131.079 kb on - strand at 131.174 kb on + strand at 131.174 kb on + strand at 131.174 kb on + strand at 131.174 kb on + strand at 131.175 kb on - strand at 131.175 kb on - strand at 131.175 kb on - strand at 131.228 kb on + strand at 131.228 kb on + strand at 131.228 kb on + strand at 131.228 kb on + strand at 131.228 kb on + strand at 131.228 kb on + strand at 131.228 kb on + strand at 131.229 kb on - strand at 131.229 kb on - strand at 131.229 kb on - strand at 131.229 kb on - strand at 131.255 kb on + strand, within GFF827 at 131.255 kb on + strand, within GFF827 at 131.255 kb on + strand, within GFF827 at 131.255 kb on + strand, within GFF827 at 131.255 kb on + strand, within GFF827 at 131.256 kb on - strand, within GFF827 at 131.256 kb on - strand, within GFF827 at 131.256 kb on - strand, within GFF827 at 131.510 kb on + strand, within GFF827 at 131.510 kb on + strand, within GFF827 at 131.510 kb on + strand, within GFF827 at 131.511 kb on - strand, within GFF827 at 131.511 kb on - strand, within GFF827 at 131.511 kb on - strand, within GFF827 at 131.594 kb on + strand, within GFF827 at 131.594 kb on + strand, within GFF827 at 131.594 kb on + strand, within GFF827 at 131.594 kb on + strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.595 kb on - strand, within GFF827 at 131.609 kb on + strand, within GFF827 at 131.610 kb on - strand, within GFF827 at 131.610 kb on - strand, within GFF827 at 131.610 kb on - strand, within GFF827 at 131.610 kb on - strand, within GFF827 at 131.639 kb on + strand, within GFF827 at 131.640 kb on - strand, within GFF827 at 131.640 kb on - strand, within GFF827 at 131.640 kb on - strand, within GFF827
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 129,447 + GFF823 0.76 -0.3 129,448 - GFF823 0.76 +0.1 129,501 + GFF823 0.79 -1.0 129,502 - GFF823 0.79 -1.5 129,502 - GFF823 0.79 -0.3 129,502 - GFF823 0.79 +0.2 129,502 - GFF823 0.79 -0.1 129,976 + GFF824 0.29 -0.5 129,976 + GFF824 0.29 -1.6 129,976 + GFF824 0.29 +1.1 129,977 - GFF824 0.30 +0.3 129,977 - GFF824 0.30 -1.9 130,002 + GFF824 0.36 +0.9 130,002 + GFF824 0.36 -0.3 130,002 + GFF824 0.36 -1.1 130,002 + GFF824 0.36 +0.2 130,003 - GFF824 0.36 +1.1 130,003 - GFF824 0.36 -0.5 130,003 - GFF824 0.36 -0.5 130,107 + GFF824 0.62 -0.3 130,107 + GFF824 0.62 +0.5 130,107 + GFF824 0.62 -0.5 130,107 + GFF824 0.62 +0.2 130,108 - GFF824 0.62 -0.3 130,108 - GFF824 0.62 +1.0 130,108 - GFF824 0.62 -1.6 130,108 - GFF824 0.62 -0.0 130,206 + GFF824 0.86 -1.9 130,207 - GFF824 0.86 +0.2 130,207 - GFF824 0.86 -0.3 130,319 + +0.7 130,319 + -0.1 130,319 + -1.8 130,319 + -0.4 130,320 - -0.5 130,320 - -0.1 130,320 - -0.8 130,327 + -1.1 130,327 + +0.7 130,327 + +0.1 130,327 + +0.5 130,327 + -0.7 130,327 + -0.7 130,327 + -0.6 130,327 + -0.5 130,327 + -0.6 130,327 + -0.8 130,327 + -0.5 130,327 + -0.0 130,327 + +3.7 130,328 - -1.0 130,328 - -0.3 130,328 - -0.3 130,328 - -0.6 130,328 - -0.5 130,328 - -1.2 130,328 - -0.7 130,328 - -0.3 130,328 - -0.8 130,328 - +0.3 130,328 - -0.0 130,328 - +0.7 130,328 - -0.2 130,353 - -0.3 130,353 - +0.2 130,353 - -0.1 130,353 - +0.1 130,353 - +0.9 130,416 - -0.7 130,416 - -1.3 130,483 + GFF825 0.25 -0.5 130,483 + GFF825 0.25 -0.5 130,484 - GFF825 0.25 -0.1 130,484 - GFF825 0.25 -0.2 130,484 - GFF825 0.25 -0.2 130,484 - GFF825 0.25 -0.0 130,484 - GFF825 0.25 +0.1 130,537 + GFF825 0.49 +0.7 130,537 + GFF825 0.49 -1.5 130,537 + GFF825 0.49 +0.1 130,537 + GFF825 0.49 -0.1 130,537 + GFF825 0.49 -0.5 130,537 + GFF825 0.49 +1.7 130,538 - GFF825 0.49 -0.4 130,538 - GFF825 0.49 -1.0 130,538 - GFF825 0.49 -0.1 130,538 - GFF825 0.49 +0.3 130,538 - GFF825 0.49 -1.6 130,538 - GFF825 0.49 -0.6 130,538 - GFF825 0.49 +0.1 130,538 - GFF825 0.49 -1.5 130,538 - GFF825 0.49 -0.2 130,567 + GFF825 0.62 +0.7 130,576 + GFF825 0.66 -0.0 130,577 - GFF825 0.66 +0.7 130,577 - GFF825 0.66 -1.5 130,577 - GFF825 0.66 +0.4 130,649 + -1.1 130,651 + +0.3 130,651 + -0.1 130,651 + +2.7 130,651 + -1.1 130,652 - -1.0 130,652 - -0.1 130,652 - +0.8 130,652 - +0.7 130,652 - -0.8 130,652 - +0.6 130,652 - -0.2 130,784 + +0.7 130,784 + -0.1 130,784 + +0.4 130,784 + -0.3 130,785 - +0.1 130,785 - +0.5 130,952 + GFF826 0.82 +0.5 131,078 + -1.1 131,078 + +0.0 131,078 + -0.2 131,079 - -0.5 131,079 - +0.2 131,174 + +0.9 131,174 + +0.2 131,174 + +0.6 131,174 + +2.5 131,175 - -1.1 131,175 - -0.4 131,175 - +0.4 131,228 + +0.3 131,228 + -1.6 131,228 + -0.6 131,228 + +0.2 131,228 + -0.7 131,228 + -0.8 131,228 + -0.1 131,229 - -1.2 131,229 - -0.2 131,229 - +0.2 131,229 - -0.8 131,255 + GFF827 0.11 -0.1 131,255 + GFF827 0.11 -1.8 131,255 + GFF827 0.11 -0.4 131,255 + GFF827 0.11 -0.4 131,255 + GFF827 0.11 -1.3 131,256 - GFF827 0.11 -2.2 131,256 - GFF827 0.11 -1.2 131,256 - GFF827 0.11 +0.3 131,510 + GFF827 0.49 -0.5 131,510 + GFF827 0.49 +0.4 131,510 + GFF827 0.49 -1.1 131,511 - GFF827 0.49 +0.4 131,511 - GFF827 0.49 -0.2 131,511 - GFF827 0.49 +1.7 131,594 + GFF827 0.61 +0.1 131,594 + GFF827 0.61 -0.0 131,594 + GFF827 0.61 +0.1 131,594 + GFF827 0.61 -0.3 131,595 - GFF827 0.61 -0.7 131,595 - GFF827 0.61 -0.9 131,595 - GFF827 0.61 -0.5 131,595 - GFF827 0.61 -0.3 131,595 - GFF827 0.61 -1.8 131,595 - GFF827 0.61 -0.2 131,595 - GFF827 0.61 +0.5 131,595 - GFF827 0.61 +0.6 131,595 - GFF827 0.61 -0.6 131,595 - GFF827 0.61 +0.2 131,595 - GFF827 0.61 -0.7 131,595 - GFF827 0.61 -0.1 131,595 - GFF827 0.61 -0.9 131,609 + GFF827 0.63 -0.6 131,610 - GFF827 0.63 +0.5 131,610 - GFF827 0.63 +1.0 131,610 - GFF827 0.63 -1.6 131,610 - GFF827 0.63 -1.1 131,639 + GFF827 0.68 -1.6 131,640 - GFF827 0.68 +1.9 131,640 - GFF827 0.68 -0.4 131,640 - GFF827 0.68 +0.7
Or see this region's nucleotide sequence