Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF779 and GFF780 are separated by 175 nucleotides GFF780 and GFF781 overlap by 8 nucleotides GFF781 and GFF782 are separated by 5 nucleotides GFF782 and GFF783 are separated by 101 nucleotides
GFF779 - hypothetical protein, at 60,892 to 62,088
GFF779
GFF780 - no description, at 62,264 to 62,692
GFF780
GFF781 - hypothetical protein, at 62,685 to 64,532
GFF781
GFF782 - Alpha-ketoglutarate-dependent dioxygenase AlkB (EC 1.14.11.33), at 64,538 to 65,245
GFF782
GFF783 - no description, at 65,347 to 66,069
GFF783
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 61.744 kb on + strand, within GFF779 at 61.744 kb on + strand, within GFF779 at 61.763 kb on - strand, within GFF779 at 61.869 kb on + strand, within GFF779 at 61.869 kb on + strand, within GFF779 at 61.997 kb on - strand at 61.997 kb on - strand at 62.035 kb on + strand at 62.036 kb on - strand at 62.036 kb on - strand at 62.036 kb on - strand at 62.139 kb on + strand at 62.139 kb on + strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.140 kb on - strand at 62.242 kb on + strand at 62.242 kb on + strand at 62.242 kb on + strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.243 kb on - strand at 62.257 kb on - strand at 62.276 kb on + strand at 62.277 kb on - strand at 62.277 kb on - strand at 62.277 kb on - strand at 62.502 kb on - strand, within GFF780 at 62.502 kb on - strand, within GFF780 at 62.546 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.615 kb on + strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.616 kb on - strand, within GFF780 at 62.642 kb on - strand, within GFF780 at 62.690 kb on + strand at 62.690 kb on + strand at 62.691 kb on - strand at 62.691 kb on - strand at 62.755 kb on + strand at 63.410 kb on - strand, within GFF781 at 63.559 kb on + strand, within GFF781 at 63.559 kb on + strand, within GFF781 at 63.634 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.640 kb on + strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.641 kb on - strand, within GFF781 at 63.700 kb on + strand, within GFF781 at 63.700 kb on + strand, within GFF781 at 63.700 kb on + strand, within GFF781 at 63.700 kb on + strand, within GFF781 at 63.700 kb on + strand, within GFF781 at 63.701 kb on - strand, within GFF781 at 63.701 kb on - strand, within GFF781 at 63.701 kb on - strand, within GFF781 at 63.902 kb on - strand, within GFF781 at 63.985 kb on + strand, within GFF781 at 64.193 kb on - strand, within GFF781 at 64.193 kb on - strand, within GFF781 at 64.193 kb on - strand, within GFF781 at 64.282 kb on + strand, within GFF781 at 64.282 kb on + strand, within GFF781 at 64.283 kb on - strand, within GFF781 at 64.283 kb on - strand, within GFF781 at 64.465 kb on + strand at 64.465 kb on + strand at 64.466 kb on - strand at 64.537 kb on - strand at 64.682 kb on + strand, within GFF782 at 64.683 kb on - strand, within GFF782 at 64.764 kb on + strand, within GFF782 at 64.765 kb on - strand, within GFF782 at 64.815 kb on + strand, within GFF782 at 64.816 kb on - strand, within GFF782 at 65.268 kb on + strand at 65.268 kb on + strand at 65.268 kb on + strand at 65.289 kb on + strand at 65.289 kb on + strand at 65.292 kb on + strand at 65.292 kb on + strand at 65.293 kb on - strand at 65.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 61,744 + GFF779 0.71 -0.5 61,744 + GFF779 0.71 +0.5 61,763 - GFF779 0.73 -0.8 61,869 + GFF779 0.82 +0.1 61,869 + GFF779 0.82 -0.2 61,997 - +0.0 61,997 - +0.4 62,035 + +0.2 62,036 - -0.0 62,036 - -1.0 62,036 - +0.1 62,139 + -0.1 62,139 + -0.0 62,140 - -0.3 62,140 - -0.1 62,140 - +1.3 62,242 + +0.8 62,242 + -1.3 62,242 + +0.3 62,243 - -0.6 62,243 - -0.6 62,243 - +0.4 62,243 - +0.1 62,257 - -0.7 62,276 + -0.5 62,277 - -0.8 62,277 - +0.1 62,277 - +0.4 62,502 - GFF780 0.55 +1.7 62,502 - GFF780 0.55 +0.1 62,546 + GFF780 0.66 -0.9 62,615 + GFF780 0.82 -0.0 62,615 + GFF780 0.82 +0.2 62,615 + GFF780 0.82 +0.6 62,615 + GFF780 0.82 -0.6 62,615 + GFF780 0.82 -0.2 62,616 - GFF780 0.82 -0.5 62,616 - GFF780 0.82 -0.2 62,616 - GFF780 0.82 -0.0 62,616 - GFF780 0.82 -0.1 62,642 - GFF780 0.88 -2.8 62,690 + +0.1 62,690 + +1.7 62,691 - +0.5 62,691 - -0.5 62,755 + +0.1 63,410 - GFF781 0.39 +1.4 63,559 + GFF781 0.47 +0.3 63,559 + GFF781 0.47 -0.0 63,634 + GFF781 0.51 -0.7 63,640 + GFF781 0.52 +0.5 63,640 + GFF781 0.52 -1.6 63,640 + GFF781 0.52 +0.2 63,641 - GFF781 0.52 -0.1 63,641 - GFF781 0.52 -1.5 63,641 - GFF781 0.52 -0.7 63,700 + GFF781 0.55 -0.7 63,700 + GFF781 0.55 -0.1 63,700 + GFF781 0.55 -0.5 63,700 + GFF781 0.55 -0.2 63,700 + GFF781 0.55 +0.8 63,701 - GFF781 0.55 +0.8 63,701 - GFF781 0.55 -0.8 63,701 - GFF781 0.55 +0.2 63,902 - GFF781 0.66 +0.5 63,985 + GFF781 0.70 +0.9 64,193 - GFF781 0.82 +1.1 64,193 - GFF781 0.82 +0.8 64,193 - GFF781 0.82 -0.3 64,282 + GFF781 0.86 +0.1 64,282 + GFF781 0.86 +0.1 64,283 - GFF781 0.86 +1.2 64,283 - GFF781 0.86 -1.1 64,465 + +0.8 64,465 + +0.2 64,466 - -0.8 64,537 - -0.0 64,682 + GFF782 0.20 -1.0 64,683 - GFF782 0.20 +0.1 64,764 + GFF782 0.32 -0.2 64,765 - GFF782 0.32 -0.3 64,815 + GFF782 0.39 -1.5 64,816 - GFF782 0.39 -0.9 65,268 + +0.5 65,268 + -0.6 65,268 + +0.2 65,289 + -0.6 65,289 + +0.4 65,292 + +0.1 65,292 + -2.2 65,293 - +1.1 65,293 - -0.0
Or see this region's nucleotide sequence