Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF75 and GFF76 overlap by 4 nucleotides GFF76 and GFF77 overlap by 7 nucleotides GFF77 and GFF78 are separated by 1 nucleotides
GFF75 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 92,148 to 93,164
GFF75
GFF76 - Alkanesulfonates transport system permease protein, at 93,161 to 94,228
GFF76
GFF77 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 94,222 to 95,025
GFF77
GFF78 - Cytochrome c family protein, at 95,027 to 96,190
GFF78
Position (kb) 93
94
95 Strain fitness (log2 ratio) -1
0
1 at 92.622 kb on + strand, within GFF75 at 92.622 kb on + strand, within GFF75 at 92.623 kb on - strand, within GFF75 at 92.623 kb on - strand, within GFF75 at 92.925 kb on + strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.970 kb on + strand, within GFF75 at 92.970 kb on + strand, within GFF75 at 92.971 kb on - strand, within GFF75 at 93.024 kb on + strand, within GFF75 at 93.024 kb on + strand, within GFF75 at 93.024 kb on + strand, within GFF75 at 93.025 kb on - strand, within GFF75 at 93.025 kb on - strand, within GFF75 at 93.909 kb on - strand, within GFF76 at 93.909 kb on - strand, within GFF76 at 93.909 kb on - strand, within GFF76 at 93.911 kb on + strand, within GFF76 at 93.911 kb on + strand, within GFF76 at 93.911 kb on + strand, within GFF76 at 93.911 kb on + strand, within GFF76 at 93.912 kb on - strand, within GFF76 at 93.912 kb on - strand, within GFF76 at 93.912 kb on - strand, within GFF76 at 94.080 kb on - strand, within GFF76 at 94.080 kb on - strand, within GFF76 at 94.109 kb on + strand, within GFF76 at 94.121 kb on + strand, within GFF76 at 94.121 kb on + strand, within GFF76 at 94.121 kb on + strand, within GFF76 at 94.121 kb on + strand, within GFF76 at 94.121 kb on + strand, within GFF76 at 94.122 kb on - strand at 94.122 kb on - strand at 94.122 kb on - strand at 94.122 kb on - strand at 94.147 kb on - strand at 94.534 kb on + strand, within GFF77 at 94.534 kb on + strand, within GFF77 at 94.535 kb on - strand, within GFF77 at 94.535 kb on - strand, within GFF77
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 92,622 + GFF75 0.47 +1.0 92,622 + GFF75 0.47 +0.4 92,623 - GFF75 0.47 -0.7 92,623 - GFF75 0.47 +0.0 92,925 + GFF75 0.76 -0.9 92,926 - GFF75 0.76 -0.4 92,926 - GFF75 0.76 -0.2 92,926 - GFF75 0.76 -0.4 92,926 - GFF75 0.76 -0.1 92,926 - GFF75 0.76 -0.1 92,970 + GFF75 0.81 +0.7 92,970 + GFF75 0.81 -0.5 92,971 - GFF75 0.81 +0.0 93,024 + GFF75 0.86 -0.7 93,024 + GFF75 0.86 +0.3 93,024 + GFF75 0.86 -0.1 93,025 - GFF75 0.86 -0.3 93,025 - GFF75 0.86 -0.3 93,909 - GFF76 0.70 -0.0 93,909 - GFF76 0.70 +0.8 93,909 - GFF76 0.70 -0.3 93,911 + GFF76 0.70 -0.8 93,911 + GFF76 0.70 +0.3 93,911 + GFF76 0.70 +0.1 93,911 + GFF76 0.70 +0.0 93,912 - GFF76 0.70 +1.4 93,912 - GFF76 0.70 +0.4 93,912 - GFF76 0.70 +0.3 94,080 - GFF76 0.86 -0.6 94,080 - GFF76 0.86 +1.0 94,109 + GFF76 0.89 +0.6 94,121 + GFF76 0.90 +0.7 94,121 + GFF76 0.90 -0.6 94,121 + GFF76 0.90 +0.5 94,121 + GFF76 0.90 +0.3 94,121 + GFF76 0.90 -1.1 94,122 - +0.5 94,122 - +0.1 94,122 - -0.6 94,122 - +0.7 94,147 - +0.3 94,534 + GFF77 0.39 +0.1 94,534 + GFF77 0.39 +0.7 94,535 - GFF77 0.39 +0.1 94,535 - GFF77 0.39 +0.7
Or see this region's nucleotide sequence