Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF755 and GFF756 overlap by 4 nucleotides GFF756 and GFF757 overlap by 4 nucleotides GFF757 and GFF758 are separated by 9 nucleotides GFF758 and GFF759 are separated by 13 nucleotides
GFF755 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 18,670 to 20,568
GFF755
GFF756 - no description, at 20,565 to 20,711
GFF756
GFF757 - hypothetical protein, at 20,708 to 21,535
GFF757
GFF758 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 21,545 to 22,390
GFF758
GFF759 - FIG01121861: hypothetical protein, at 22,404 to 23,597
GFF759
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.302 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.656 kb on - strand, within GFF756 at 20.656 kb on - strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.236 kb on + strand, within GFF757 at 21.550 kb on + strand at 21.550 kb on + strand at 21.550 kb on + strand at 21.551 kb on - strand at 22.405 kb on + strand at 22.405 kb on + strand at 22.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,835 + GFF755 0.61 -1.6 19,835 + GFF755 0.61 -0.3 19,835 + GFF755 0.61 -0.8 19,835 + GFF755 0.61 +0.5 19,836 - GFF755 0.61 -0.2 19,836 - GFF755 0.61 +0.7 19,836 - GFF755 0.61 +0.1 20,224 + GFF755 0.82 +1.3 20,224 + GFF755 0.82 -0.5 20,225 - GFF755 0.82 -0.5 20,225 - GFF755 0.82 -0.1 20,302 + GFF755 0.86 +0.4 20,329 + GFF755 0.87 -0.2 20,329 + GFF755 0.87 -0.3 20,329 + GFF755 0.87 -0.0 20,330 - GFF755 0.87 -0.6 20,330 - GFF755 0.87 -2.0 20,330 - GFF755 0.87 +0.2 20,656 - GFF756 0.62 -1.1 20,656 - GFF756 0.62 +0.3 20,677 + GFF756 0.76 -0.2 20,677 + GFF756 0.76 -0.0 20,677 + GFF756 0.76 -0.4 20,677 + GFF756 0.76 +0.2 20,677 + GFF756 0.76 -0.1 20,677 + GFF756 0.76 -0.2 20,677 + GFF756 0.76 -0.4 20,677 + GFF756 0.76 +1.0 20,677 + GFF756 0.76 -0.6 20,677 + GFF756 0.76 -0.5 20,677 + GFF756 0.76 +0.6 20,677 + GFF756 0.76 -0.1 20,677 + GFF756 0.76 -1.9 20,677 + GFF756 0.76 -0.5 20,677 + GFF756 0.76 +0.1 20,678 - GFF756 0.77 -0.1 20,678 - GFF756 0.77 +0.1 20,678 - GFF756 0.77 +0.1 20,678 - GFF756 0.77 -0.2 20,678 - GFF756 0.77 -0.8 20,678 - GFF756 0.77 -1.3 20,678 - GFF756 0.77 -0.2 20,678 - GFF756 0.77 -0.3 20,678 - GFF756 0.77 +0.9 20,678 - GFF756 0.77 +0.0 20,678 - GFF756 0.77 +1.1 20,681 + GFF756 0.79 -1.0 20,681 + GFF756 0.79 -0.6 20,681 + GFF756 0.79 -0.2 20,681 + GFF756 0.79 -0.4 20,681 + GFF756 0.79 -0.7 20,681 + GFF756 0.79 -0.1 20,681 + GFF756 0.79 +0.2 20,681 + GFF756 0.79 +0.0 20,681 + GFF756 0.79 +1.1 20,682 - GFF756 0.80 +1.0 20,682 - GFF756 0.80 -0.6 20,682 - GFF756 0.80 -0.8 20,682 - GFF756 0.80 +0.2 20,682 - GFF756 0.80 +1.0 20,682 - GFF756 0.80 +1.7 20,682 - GFF756 0.80 -1.1 20,682 - GFF756 0.80 -0.1 20,682 - GFF756 0.80 +0.5 20,682 - GFF756 0.80 -0.9 20,682 - GFF756 0.80 +0.9 20,682 - GFF756 0.80 +0.1 20,778 + -0.6 20,778 + -0.8 20,778 + -0.4 20,778 + +0.5 20,779 - -1.8 20,779 - -0.3 20,779 - -0.0 20,779 - -0.2 20,779 - +0.1 20,779 - -0.6 20,779 - +0.1 21,059 + GFF757 0.42 +0.1 21,059 + GFF757 0.42 -0.1 21,059 + GFF757 0.42 +0.7 21,059 + GFF757 0.42 +0.1 21,059 + GFF757 0.42 +0.1 21,060 - GFF757 0.43 -0.8 21,060 - GFF757 0.43 +0.1 21,236 + GFF757 0.64 +1.1 21,550 + -0.9 21,550 + -0.8 21,550 + -0.5 21,551 - -0.4 22,405 + -1.5 22,405 + -0.2 22,406 - -0.9
Or see this region's nucleotide sequence