Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF754 and GFF755 are separated by 147 nucleotides GFF755 and GFF756 overlap by 4 nucleotides GFF756 and GFF757 overlap by 4 nucleotides GFF757 and GFF758 are separated by 9 nucleotides
GFF754 - FIG00975093: hypothetical protein, at 17,689 to 18,522
GFF754
GFF755 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 18,670 to 20,568
GFF755
GFF756 - no description, at 20,565 to 20,711
GFF756
GFF757 - hypothetical protein, at 20,708 to 21,535
GFF757
GFF758 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 21,545 to 22,390
GFF758
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.881 kb on + strand, within GFF754 at 17.881 kb on + strand, within GFF754 at 17.882 kb on - strand, within GFF754 at 18.000 kb on - strand, within GFF754 at 18.194 kb on + strand, within GFF754 at 18.194 kb on + strand, within GFF754 at 18.195 kb on - strand, within GFF754 at 18.195 kb on - strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.323 kb on + strand, within GFF754 at 18.324 kb on - strand, within GFF754 at 18.330 kb on - strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.618 kb on + strand at 18.618 kb on + strand at 18.618 kb on + strand at 18.618 kb on + strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.662 kb on + strand at 18.662 kb on + strand at 18.662 kb on + strand at 18.663 kb on - strand at 18.663 kb on - strand at 18.663 kb on - strand at 19.156 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.451 kb on - strand, within GFF755 at 19.451 kb on - strand, within GFF755 at 19.456 kb on + strand, within GFF755 at 19.456 kb on + strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.466 kb on + strand, within GFF755 at 19.477 kb on + strand, within GFF755 at 19.478 kb on - strand, within GFF755 at 19.573 kb on + strand, within GFF755 at 19.573 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.302 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.656 kb on - strand, within GFF756 at 20.656 kb on - strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.236 kb on + strand, within GFF757 at 21.550 kb on + strand at 21.550 kb on + strand at 21.550 kb on + strand at 21.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,881 + GFF754 0.23 +0.0 17,881 + GFF754 0.23 +0.1 17,882 - GFF754 0.23 +0.4 18,000 - GFF754 0.37 +1.2 18,194 + GFF754 0.61 -0.3 18,194 + GFF754 0.61 -0.1 18,195 - GFF754 0.61 +0.9 18,195 - GFF754 0.61 -0.2 18,281 + GFF754 0.71 +0.2 18,281 + GFF754 0.71 -0.1 18,281 + GFF754 0.71 -0.4 18,323 + GFF754 0.76 +0.4 18,324 - GFF754 0.76 +0.2 18,330 - GFF754 0.77 -0.1 18,365 + GFF754 0.81 -1.0 18,365 + GFF754 0.81 -0.2 18,365 + GFF754 0.81 +0.5 18,365 + GFF754 0.81 +0.6 18,366 - GFF754 0.81 +0.8 18,366 - GFF754 0.81 -0.6 18,366 - GFF754 0.81 -0.3 18,366 - GFF754 0.81 -0.2 18,366 - GFF754 0.81 -0.8 18,366 - GFF754 0.81 +1.2 18,618 + -0.3 18,618 + -0.0 18,618 + -0.6 18,618 + +0.6 18,619 - +0.3 18,619 - +0.7 18,619 - -0.9 18,619 - +0.9 18,619 - -0.6 18,619 - +0.9 18,619 - +1.0 18,619 - +1.3 18,662 + -0.1 18,662 + +0.1 18,662 + -0.4 18,663 - -0.4 18,663 - +0.8 18,663 - -0.6 19,156 + GFF755 0.26 -0.4 19,450 + GFF755 0.41 +0.5 19,450 + GFF755 0.41 +0.7 19,450 + GFF755 0.41 +0.3 19,450 + GFF755 0.41 +0.3 19,450 + GFF755 0.41 +0.1 19,451 - GFF755 0.41 -1.2 19,451 - GFF755 0.41 +1.7 19,456 + GFF755 0.41 +0.2 19,456 + GFF755 0.41 -1.3 19,457 - GFF755 0.41 +0.4 19,457 - GFF755 0.41 +0.3 19,457 - GFF755 0.41 -0.5 19,457 - GFF755 0.41 +0.5 19,457 - GFF755 0.41 +1.7 19,457 - GFF755 0.41 -0.8 19,457 - GFF755 0.41 +0.2 19,466 + GFF755 0.42 -1.3 19,477 + GFF755 0.42 +3.6 19,478 - GFF755 0.43 +0.2 19,573 + GFF755 0.48 -0.6 19,573 + GFF755 0.48 +0.2 19,835 + GFF755 0.61 -1.6 19,835 + GFF755 0.61 -0.3 19,835 + GFF755 0.61 -0.8 19,835 + GFF755 0.61 +0.5 19,836 - GFF755 0.61 -0.2 19,836 - GFF755 0.61 +0.7 19,836 - GFF755 0.61 +0.1 20,224 + GFF755 0.82 +1.3 20,224 + GFF755 0.82 -0.5 20,225 - GFF755 0.82 -0.5 20,225 - GFF755 0.82 -0.1 20,302 + GFF755 0.86 +0.4 20,329 + GFF755 0.87 -0.2 20,329 + GFF755 0.87 -0.3 20,329 + GFF755 0.87 -0.0 20,330 - GFF755 0.87 -0.6 20,330 - GFF755 0.87 -2.0 20,330 - GFF755 0.87 +0.2 20,656 - GFF756 0.62 -1.1 20,656 - GFF756 0.62 +0.3 20,677 + GFF756 0.76 -0.2 20,677 + GFF756 0.76 -0.0 20,677 + GFF756 0.76 -0.4 20,677 + GFF756 0.76 +0.2 20,677 + GFF756 0.76 -0.1 20,677 + GFF756 0.76 -0.2 20,677 + GFF756 0.76 -0.4 20,677 + GFF756 0.76 +1.0 20,677 + GFF756 0.76 -0.6 20,677 + GFF756 0.76 -0.5 20,677 + GFF756 0.76 +0.6 20,677 + GFF756 0.76 -0.1 20,677 + GFF756 0.76 -1.9 20,677 + GFF756 0.76 -0.5 20,677 + GFF756 0.76 +0.1 20,678 - GFF756 0.77 -0.1 20,678 - GFF756 0.77 +0.1 20,678 - GFF756 0.77 +0.1 20,678 - GFF756 0.77 -0.2 20,678 - GFF756 0.77 -0.8 20,678 - GFF756 0.77 -1.3 20,678 - GFF756 0.77 -0.2 20,678 - GFF756 0.77 -0.3 20,678 - GFF756 0.77 +0.9 20,678 - GFF756 0.77 +0.0 20,678 - GFF756 0.77 +1.1 20,681 + GFF756 0.79 -1.0 20,681 + GFF756 0.79 -0.6 20,681 + GFF756 0.79 -0.2 20,681 + GFF756 0.79 -0.4 20,681 + GFF756 0.79 -0.7 20,681 + GFF756 0.79 -0.1 20,681 + GFF756 0.79 +0.2 20,681 + GFF756 0.79 +0.0 20,681 + GFF756 0.79 +1.1 20,682 - GFF756 0.80 +1.0 20,682 - GFF756 0.80 -0.6 20,682 - GFF756 0.80 -0.8 20,682 - GFF756 0.80 +0.2 20,682 - GFF756 0.80 +1.0 20,682 - GFF756 0.80 +1.7 20,682 - GFF756 0.80 -1.1 20,682 - GFF756 0.80 -0.1 20,682 - GFF756 0.80 +0.5 20,682 - GFF756 0.80 -0.9 20,682 - GFF756 0.80 +0.9 20,682 - GFF756 0.80 +0.1 20,778 + -0.6 20,778 + -0.8 20,778 + -0.4 20,778 + +0.5 20,779 - -1.8 20,779 - -0.3 20,779 - -0.0 20,779 - -0.2 20,779 - +0.1 20,779 - -0.6 20,779 - +0.1 21,059 + GFF757 0.42 +0.1 21,059 + GFF757 0.42 -0.1 21,059 + GFF757 0.42 +0.7 21,059 + GFF757 0.42 +0.1 21,059 + GFF757 0.42 +0.1 21,060 - GFF757 0.43 -0.8 21,060 - GFF757 0.43 +0.1 21,236 + GFF757 0.64 +1.1 21,550 + -0.9 21,550 + -0.8 21,550 + -0.5 21,551 - -0.4
Or see this region's nucleotide sequence