Strain Fitness in Variovorax sp. SCN45 around GFF739

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF737 and GFF738 are separated by 52 nucleotidesGFF738 and GFF739 are separated by 357 nucleotidesGFF739 and GFF740 are separated by 338 nucleotides GFF737 - FIG00720498: hypothetical protein, at 391 to 813 GFF737 GFF738 - T6SS PAAR-repeat protein, at 866 to 1,009 GFF738 GFF739 - BUG/TctC family periplasmic protein, at 1,367 to 2,374 GFF739 GFF740 - Uncharacterized protein YdcJ, at 2,713 to 4,092 GFF740 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.605 kb on + strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.606 kb on - strand, within GFF737at 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.795 kb on + strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.796 kb on - strandat 0.855 kb on + strandat 0.855 kb on + strandat 0.856 kb on - strandat 0.896 kb on + strand, within GFF738at 0.896 kb on + strand, within GFF738at 0.896 kb on + strand, within GFF738at 0.896 kb on + strand, within GFF738at 0.896 kb on + strand, within GFF738at 0.896 kb on + strand, within GFF738at 0.897 kb on - strand, within GFF738at 1.061 kb on + strandat 1.061 kb on + strandat 1.061 kb on + strandat 1.061 kb on + strandat 1.062 kb on - strandat 1.062 kb on - strandat 1.062 kb on - strandat 1.062 kb on - strandat 1.321 kb on + strandat 1.321 kb on + strandat 1.321 kb on + strandat 1.321 kb on + strandat 1.321 kb on + strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.322 kb on - strandat 1.788 kb on + strand, within GFF739at 1.788 kb on + strand, within GFF739at 1.788 kb on + strand, within GFF739at 1.825 kb on + strand, within GFF739at 1.825 kb on + strand, within GFF739at 1.825 kb on + strand, within GFF739at 1.825 kb on + strand, within GFF739at 1.825 kb on + strand, within GFF739at 1.826 kb on - strand, within GFF739at 1.826 kb on - strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.875 kb on + strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.876 kb on - strand, within GFF739at 1.905 kb on + strand, within GFF739at 1.905 kb on + strand, within GFF739at 1.905 kb on + strand, within GFF739at 1.906 kb on - strand, within GFF739at 1.906 kb on - strand, within GFF739at 1.906 kb on - strand, within GFF739at 1.906 kb on - strand, within GFF739at 1.906 kb on - strand, within GFF739at 1.906 kb on - strand, within GFF739at 1.932 kb on + strand, within GFF739at 1.932 kb on + strand, within GFF739at 1.933 kb on - strand, within GFF739at 1.933 kb on - strand, within GFF739at 1.933 kb on - strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.013 kb on + strand, within GFF739at 2.014 kb on - strand, within GFF739at 2.014 kb on - strand, within GFF739at 2.014 kb on - strand, within GFF739at 2.014 kb on - strand, within GFF739at 2.014 kb on - strand, within GFF739at 2.023 kb on - strand, within GFF739at 2.028 kb on + strand, within GFF739at 2.028 kb on + strand, within GFF739at 2.028 kb on + strand, within GFF739at 2.028 kb on + strand, within GFF739at 2.029 kb on - strand, within GFF739at 2.029 kb on - strand, within GFF739at 2.029 kb on - strand, within GFF739at 2.079 kb on + strand, within GFF739at 2.079 kb on + strand, within GFF739at 2.079 kb on + strand, within GFF739at 2.080 kb on - strand, within GFF739at 2.080 kb on - strand, within GFF739at 2.203 kb on + strand, within GFF739at 2.203 kb on + strand, within GFF739at 2.203 kb on + strand, within GFF739at 2.203 kb on + strand, within GFF739at 2.203 kb on + strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.204 kb on - strand, within GFF739at 2.479 kb on + strandat 2.479 kb on + strandat 2.479 kb on + strandat 2.479 kb on + strandat 2.480 kb on - strandat 2.480 kb on - strandat 2.480 kb on - strandat 2.782 kb on + strandat 2.782 kb on + strandat 2.782 kb on + strandat 2.782 kb on + strandat 2.782 kb on + strandat 2.782 kb on + strandat 2.783 kb on - strandat 2.783 kb on - strandat 2.783 kb on - strandat 2.783 kb on - strandat 2.803 kb on + strandat 2.803 kb on + strandat 2.804 kb on - strandat 3.002 kb on - strand, within GFF740at 3.002 kb on - strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.004 kb on + strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.005 kb on - strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.316 kb on + strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740at 3.317 kb on - strand, within GFF740

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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605 + GFF737 0.51 +0.1
605 + GFF737 0.51 +1.1
605 + GFF737 0.51 -0.3
605 + GFF737 0.51 -0.0
605 + GFF737 0.51 +0.1
605 + GFF737 0.51 -0.9
605 + GFF737 0.51 +0.4
605 + GFF737 0.51 +1.4
605 + GFF737 0.51 -0.3
605 + GFF737 0.51 -0.9
605 + GFF737 0.51 -0.5
605 + GFF737 0.51 +1.7
605 + GFF737 0.51 +0.7
605 + GFF737 0.51 -0.1
606 - GFF737 0.51 -1.1
606 - GFF737 0.51 +0.1
606 - GFF737 0.51 -0.4
606 - GFF737 0.51 -0.6
606 - GFF737 0.51 -0.4
606 - GFF737 0.51 +0.1
606 - GFF737 0.51 -0.0
606 - GFF737 0.51 -0.5
795 + +1.7
795 + +0.6
795 + -1.2
795 + -0.1
795 + -0.8
795 + +0.7
795 + -1.8
795 + -0.1
795 + -0.4
796 - -0.2
796 - +0.0
796 - +1.2
796 - +0.1
796 - -0.3
796 - +0.1
796 - -1.1
796 - +0.1
796 - +0.4
796 - +1.1
796 - +1.0
855 + -0.9
855 + -0.8
856 - -1.9
896 + GFF738 0.21 -1.1
896 + GFF738 0.21 -0.3
896 + GFF738 0.21 +0.5
896 + GFF738 0.21 +1.0
896 + GFF738 0.21 -0.2
896 + GFF738 0.21 -1.5
897 - GFF738 0.22 +1.2
1,061 + -0.3
1,061 + +1.4
1,061 + -0.3
1,061 + +0.8
1,062 - -0.3
1,062 - -0.2
1,062 - -1.1
1,062 - -0.2
1,321 + -0.3
1,321 + +0.3
1,321 + +0.7
1,321 + -1.5
1,321 + -1.2
1,322 - -0.6
1,322 - -0.3
1,322 - -0.3
1,322 - -0.3
1,322 - +0.1
1,322 - +0.1
1,322 - -0.0
1,322 - -0.9
1,322 - -0.0
1,322 - -0.0
1,788 + GFF739 0.42 +0.7
1,788 + GFF739 0.42 +0.4
1,788 + GFF739 0.42 -0.3
1,825 + GFF739 0.45 +0.3
1,825 + GFF739 0.45 -1.1
1,825 + GFF739 0.45 +0.1
1,825 + GFF739 0.45 +0.7
1,825 + GFF739 0.45 -0.4
1,826 - GFF739 0.46 +0.1
1,826 - GFF739 0.46 +0.1
1,875 + GFF739 0.50 +0.6
1,875 + GFF739 0.50 +0.4
1,875 + GFF739 0.50 +0.1
1,875 + GFF739 0.50 +0.8
1,875 + GFF739 0.50 +0.0
1,875 + GFF739 0.50 -0.2
1,875 + GFF739 0.50 +0.3
1,875 + GFF739 0.50 -0.1
1,875 + GFF739 0.50 +0.1
1,875 + GFF739 0.50 +0.1
1,875 + GFF739 0.50 +0.5
1,875 + GFF739 0.50 +0.1
1,875 + GFF739 0.50 +1.1
1,875 + GFF739 0.50 +0.5
1,875 + GFF739 0.50 +0.7
1,875 + GFF739 0.50 -0.0
1,875 + GFF739 0.50 -0.0
1,875 + GFF739 0.50 +0.7
1,876 - GFF739 0.50 -0.0
1,876 - GFF739 0.50 +0.2
1,876 - GFF739 0.50 -0.1
1,876 - GFF739 0.50 -0.1
1,876 - GFF739 0.50 -1.1
1,876 - GFF739 0.50 -0.8
1,876 - GFF739 0.50 -0.5
1,876 - GFF739 0.50 -0.7
1,876 - GFF739 0.50 +0.5
1,876 - GFF739 0.50 +0.1
1,876 - GFF739 0.50 +0.2
1,876 - GFF739 0.50 +1.4
1,876 - GFF739 0.50 -0.1
1,876 - GFF739 0.50 +0.0
1,876 - GFF739 0.50 +0.3
1,876 - GFF739 0.50 +0.1
1,876 - GFF739 0.50 -0.1
1,905 + GFF739 0.53 +0.2
1,905 + GFF739 0.53 +0.1
1,905 + GFF739 0.53 +0.0
1,906 - GFF739 0.53 -1.3
1,906 - GFF739 0.53 -0.7
1,906 - GFF739 0.53 +0.1
1,906 - GFF739 0.53 -0.2
1,906 - GFF739 0.53 -1.1
1,906 - GFF739 0.53 -0.1
1,932 + GFF739 0.56 +0.3
1,932 + GFF739 0.56 -0.8
1,933 - GFF739 0.56 -0.3
1,933 - GFF739 0.56 -0.2
1,933 - GFF739 0.56 -0.7
2,013 + GFF739 0.64 +0.3
2,013 + GFF739 0.64 +0.6
2,013 + GFF739 0.64 +1.7
2,013 + GFF739 0.64 -0.3
2,013 + GFF739 0.64 +1.0
2,013 + GFF739 0.64 +0.5
2,013 + GFF739 0.64 -2.8
2,013 + GFF739 0.64 +0.7
2,014 - GFF739 0.64 +0.9
2,014 - GFF739 0.64 -0.5
2,014 - GFF739 0.64 +0.1
2,014 - GFF739 0.64 +1.0
2,014 - GFF739 0.64 -0.1
2,023 - GFF739 0.65 +0.2
2,028 + GFF739 0.66 +0.6
2,028 + GFF739 0.66 +0.4
2,028 + GFF739 0.66 -0.0
2,028 + GFF739 0.66 -0.3
2,029 - GFF739 0.66 -0.4
2,029 - GFF739 0.66 -0.3
2,029 - GFF739 0.66 +0.1
2,079 + GFF739 0.71 +1.1
2,079 + GFF739 0.71 +0.7
2,079 + GFF739 0.71 +0.0
2,080 - GFF739 0.71 -0.6
2,080 - GFF739 0.71 +0.2
2,203 + GFF739 0.83 -0.5
2,203 + GFF739 0.83 +0.0
2,203 + GFF739 0.83 +0.7
2,203 + GFF739 0.83 -2.0
2,203 + GFF739 0.83 -0.2
2,204 - GFF739 0.83 -0.5
2,204 - GFF739 0.83 -1.5
2,204 - GFF739 0.83 +0.1
2,204 - GFF739 0.83 -0.7
2,204 - GFF739 0.83 +0.1
2,204 - GFF739 0.83 -0.9
2,204 - GFF739 0.83 -2.0
2,204 - GFF739 0.83 -0.2
2,479 + -1.1
2,479 + +0.5
2,479 + +0.2
2,479 + +0.7
2,480 - +0.2
2,480 - -0.5
2,480 - +0.1
2,782 + -0.1
2,782 + -0.2
2,782 + -1.1
2,782 + +0.6
2,782 + -1.1
2,782 + +1.1
2,783 - -0.0
2,783 - +1.1
2,783 - +0.1
2,783 - +0.1
2,803 + -1.1
2,803 + -0.1
2,804 - -0.3
3,002 - GFF740 0.21 -0.6
3,002 - GFF740 0.21 -0.5
3,004 + GFF740 0.21 -0.5
3,004 + GFF740 0.21 -0.4
3,004 + GFF740 0.21 -0.7
3,004 + GFF740 0.21 -1.2
3,004 + GFF740 0.21 +0.5
3,004 + GFF740 0.21 +0.4
3,004 + GFF740 0.21 -0.6
3,004 + GFF740 0.21 +0.5
3,004 + GFF740 0.21 +0.0
3,004 + GFF740 0.21 +1.3
3,004 + GFF740 0.21 +2.0
3,005 - GFF740 0.21 +1.2
3,005 - GFF740 0.21 -1.0
3,005 - GFF740 0.21 +0.1
3,005 - GFF740 0.21 +0.8
3,005 - GFF740 0.21 -0.2
3,005 - GFF740 0.21 +0.2
3,005 - GFF740 0.21 -0.3
3,316 + GFF740 0.44 +3.7
3,316 + GFF740 0.44 -0.5
3,316 + GFF740 0.44 +0.1
3,316 + GFF740 0.44 +0.2
3,317 - GFF740 0.44 -0.3
3,317 - GFF740 0.44 +0.3
3,317 - GFF740 0.44 -0.8
3,317 - GFF740 0.44 +0.7
3,317 - GFF740 0.44 -0.6
3,317 - GFF740 0.44 -0.6

Or see this region's nucleotide sequence