Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF736 and GFF737 are separated by 93 nucleotides GFF737 and GFF738 are separated by 52 nucleotides GFF738 and GFF739 are separated by 357 nucleotides
GFF736 - hypothetical protein, at 139 to 297
GFF736
GFF737 - FIG00720498: hypothetical protein, at 391 to 813
GFF737
GFF738 - T6SS PAAR-repeat protein, at 866 to 1,009
GFF738
GFF739 - BUG/TctC family periplasmic protein, at 1,367 to 2,374
GFF739
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 0.052 kb on + strand at 0.052 kb on + strand at 0.052 kb on + strand at 0.052 kb on + strand at 0.052 kb on + strand at 0.052 kb on + strand at 0.052 kb on + strand at 0.052 kb on + strand at 0.077 kb on + strand at 0.106 kb on + strand at 0.106 kb on + strand at 0.107 kb on - strand at 0.107 kb on - strand at 0.129 kb on + strand at 0.129 kb on + strand at 0.129 kb on + strand at 0.129 kb on + strand at 0.129 kb on + strand at 0.129 kb on + strand at 0.129 kb on + strand at 0.130 kb on - strand at 0.130 kb on - strand at 0.130 kb on - strand at 0.130 kb on - strand at 0.130 kb on - strand at 0.130 kb on - strand at 0.160 kb on + strand, within GFF736 at 0.161 kb on - strand, within GFF736 at 0.177 kb on + strand, within GFF736 at 0.177 kb on + strand, within GFF736 at 0.178 kb on - strand, within GFF736 at 0.184 kb on + strand, within GFF736 at 0.184 kb on + strand, within GFF736 at 0.184 kb on + strand, within GFF736 at 0.185 kb on - strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.190 kb on + strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.191 kb on - strand, within GFF736 at 0.271 kb on - strand, within GFF736 at 0.271 kb on - strand, within GFF736 at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.285 kb on + strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.286 kb on - strand at 0.307 kb on + strand at 0.307 kb on + strand at 0.307 kb on + strand at 0.308 kb on - strand at 0.308 kb on - strand at 0.308 kb on - strand at 0.308 kb on - strand at 0.308 kb on - strand at 0.308 kb on - strand at 0.352 kb on + strand at 0.353 kb on - strand at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.605 kb on + strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.606 kb on - strand, within GFF737 at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.795 kb on + strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.796 kb on - strand at 0.855 kb on + strand at 0.855 kb on + strand at 0.856 kb on - strand at 0.896 kb on + strand, within GFF738 at 0.896 kb on + strand, within GFF738 at 0.896 kb on + strand, within GFF738 at 0.896 kb on + strand, within GFF738 at 0.896 kb on + strand, within GFF738 at 0.896 kb on + strand, within GFF738 at 0.897 kb on - strand, within GFF738 at 1.061 kb on + strand at 1.061 kb on + strand at 1.061 kb on + strand at 1.061 kb on + strand at 1.062 kb on - strand at 1.062 kb on - strand at 1.062 kb on - strand at 1.062 kb on - strand at 1.321 kb on + strand at 1.321 kb on + strand at 1.321 kb on + strand at 1.321 kb on + strand at 1.321 kb on + strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.322 kb on - strand at 1.788 kb on + strand, within GFF739 at 1.788 kb on + strand, within GFF739 at 1.788 kb on + strand, within GFF739 at 1.825 kb on + strand, within GFF739 at 1.825 kb on + strand, within GFF739 at 1.825 kb on + strand, within GFF739 at 1.825 kb on + strand, within GFF739 at 1.825 kb on + strand, within GFF739 at 1.826 kb on - strand, within GFF739 at 1.826 kb on - strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.875 kb on + strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.876 kb on - strand, within GFF739 at 1.905 kb on + strand, within GFF739 at 1.905 kb on + strand, within GFF739 at 1.905 kb on + strand, within GFF739 at 1.906 kb on - strand, within GFF739 at 1.906 kb on - strand, within GFF739 at 1.906 kb on - strand, within GFF739 at 1.906 kb on - strand, within GFF739 at 1.906 kb on - strand, within GFF739 at 1.906 kb on - strand, within GFF739 at 1.932 kb on + strand, within GFF739 at 1.932 kb on + strand, within GFF739 at 1.933 kb on - strand, within GFF739 at 1.933 kb on - strand, within GFF739 at 1.933 kb on - strand, within GFF739
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 52 + -0.7 52 + +0.1 52 + -0.9 52 + +0.6 52 + -0.8 52 + +1.1 52 + -0.3 52 + -0.4 77 + +0.4 106 + -0.4 106 + +0.1 107 - -0.4 107 - +1.4 129 + -0.3 129 + -0.0 129 + -0.6 129 + -0.5 129 + -0.1 129 + -0.1 129 + -0.8 130 - +0.7 130 - +0.2 130 - -0.3 130 - -0.4 130 - -0.2 130 - +1.0 160 + GFF736 0.13 -0.3 161 - GFF736 0.14 +0.1 177 + GFF736 0.24 -0.4 177 + GFF736 0.24 +0.7 178 - GFF736 0.25 -0.1 184 + GFF736 0.28 +0.2 184 + GFF736 0.28 -1.3 184 + GFF736 0.28 -0.3 185 - GFF736 0.29 -1.1 190 + GFF736 0.32 -0.5 190 + GFF736 0.32 -0.5 190 + GFF736 0.32 +0.7 190 + GFF736 0.32 -1.3 190 + GFF736 0.32 +0.1 190 + GFF736 0.32 +0.5 190 + GFF736 0.32 +0.9 190 + GFF736 0.32 +0.2 190 + GFF736 0.32 -1.1 190 + GFF736 0.32 +1.7 190 + GFF736 0.32 -0.2 191 - GFF736 0.33 +1.4 191 - GFF736 0.33 +0.3 191 - GFF736 0.33 +0.1 191 - GFF736 0.33 -0.5 191 - GFF736 0.33 +0.0 191 - GFF736 0.33 -1.1 191 - GFF736 0.33 +1.0 191 - GFF736 0.33 +0.5 191 - GFF736 0.33 -0.6 191 - GFF736 0.33 -0.6 271 - GFF736 0.83 -1.0 271 - GFF736 0.83 -1.1 285 + -0.8 285 + +1.7 285 + +0.2 285 + -1.1 285 + +1.0 285 + -0.2 285 + -0.2 285 + +0.0 285 + +0.1 285 + +0.9 285 + +0.4 286 - -1.1 286 - -0.5 286 - +2.2 286 - -0.3 286 - +2.3 286 - -0.8 286 - -0.2 286 - +0.2 286 - -0.1 286 - +1.6 286 - -0.8 286 - +3.6 286 - +0.6 307 + -0.4 307 + -0.4 307 + -0.2 308 - -0.1 308 - +0.1 308 - +0.3 308 - +0.3 308 - +0.1 308 - +1.3 352 + +0.3 353 - -0.3 605 + GFF737 0.51 +0.1 605 + GFF737 0.51 +1.1 605 + GFF737 0.51 -0.3 605 + GFF737 0.51 -0.0 605 + GFF737 0.51 +0.1 605 + GFF737 0.51 -0.9 605 + GFF737 0.51 +0.4 605 + GFF737 0.51 +1.4 605 + GFF737 0.51 -0.3 605 + GFF737 0.51 -0.9 605 + GFF737 0.51 -0.5 605 + GFF737 0.51 +1.7 605 + GFF737 0.51 +0.7 605 + GFF737 0.51 -0.1 606 - GFF737 0.51 -1.1 606 - GFF737 0.51 +0.1 606 - GFF737 0.51 -0.4 606 - GFF737 0.51 -0.6 606 - GFF737 0.51 -0.4 606 - GFF737 0.51 +0.1 606 - GFF737 0.51 -0.0 606 - GFF737 0.51 -0.5 795 + +1.7 795 + +0.6 795 + -1.2 795 + -0.1 795 + -0.8 795 + +0.7 795 + -1.8 795 + -0.1 795 + -0.4 796 - -0.2 796 - +0.0 796 - +1.2 796 - +0.1 796 - -0.3 796 - +0.1 796 - -1.1 796 - +0.1 796 - +0.4 796 - +1.1 796 - +1.0 855 + -0.9 855 + -0.8 856 - -1.9 896 + GFF738 0.21 -1.1 896 + GFF738 0.21 -0.3 896 + GFF738 0.21 +0.5 896 + GFF738 0.21 +1.0 896 + GFF738 0.21 -0.2 896 + GFF738 0.21 -1.5 897 - GFF738 0.22 +1.2 1,061 + -0.3 1,061 + +1.4 1,061 + -0.3 1,061 + +0.8 1,062 - -0.3 1,062 - -0.2 1,062 - -1.1 1,062 - -0.2 1,321 + -0.3 1,321 + +0.3 1,321 + +0.7 1,321 + -1.5 1,321 + -1.2 1,322 - -0.6 1,322 - -0.3 1,322 - -0.3 1,322 - -0.3 1,322 - +0.1 1,322 - +0.1 1,322 - -0.0 1,322 - -0.9 1,322 - -0.0 1,322 - -0.0 1,788 + GFF739 0.42 +0.7 1,788 + GFF739 0.42 +0.4 1,788 + GFF739 0.42 -0.3 1,825 + GFF739 0.45 +0.3 1,825 + GFF739 0.45 -1.1 1,825 + GFF739 0.45 +0.1 1,825 + GFF739 0.45 +0.7 1,825 + GFF739 0.45 -0.4 1,826 - GFF739 0.46 +0.1 1,826 - GFF739 0.46 +0.1 1,875 + GFF739 0.50 +0.6 1,875 + GFF739 0.50 +0.4 1,875 + GFF739 0.50 +0.1 1,875 + GFF739 0.50 +0.8 1,875 + GFF739 0.50 +0.0 1,875 + GFF739 0.50 -0.2 1,875 + GFF739 0.50 +0.3 1,875 + GFF739 0.50 -0.1 1,875 + GFF739 0.50 +0.1 1,875 + GFF739 0.50 +0.1 1,875 + GFF739 0.50 +0.5 1,875 + GFF739 0.50 +0.1 1,875 + GFF739 0.50 +1.1 1,875 + GFF739 0.50 +0.5 1,875 + GFF739 0.50 +0.7 1,875 + GFF739 0.50 -0.0 1,875 + GFF739 0.50 -0.0 1,875 + GFF739 0.50 +0.7 1,876 - GFF739 0.50 -0.0 1,876 - GFF739 0.50 +0.2 1,876 - GFF739 0.50 -0.1 1,876 - GFF739 0.50 -0.1 1,876 - GFF739 0.50 -1.1 1,876 - GFF739 0.50 -0.8 1,876 - GFF739 0.50 -0.5 1,876 - GFF739 0.50 -0.7 1,876 - GFF739 0.50 +0.5 1,876 - GFF739 0.50 +0.1 1,876 - GFF739 0.50 +0.2 1,876 - GFF739 0.50 +1.4 1,876 - GFF739 0.50 -0.1 1,876 - GFF739 0.50 +0.0 1,876 - GFF739 0.50 +0.3 1,876 - GFF739 0.50 +0.1 1,876 - GFF739 0.50 -0.1 1,905 + GFF739 0.53 +0.2 1,905 + GFF739 0.53 +0.1 1,905 + GFF739 0.53 +0.0 1,906 - GFF739 0.53 -1.3 1,906 - GFF739 0.53 -0.7 1,906 - GFF739 0.53 +0.1 1,906 - GFF739 0.53 -0.2 1,906 - GFF739 0.53 -1.1 1,906 - GFF739 0.53 -0.1 1,932 + GFF739 0.56 +0.3 1,932 + GFF739 0.56 -0.8 1,933 - GFF739 0.56 -0.3 1,933 - GFF739 0.56 -0.2 1,933 - GFF739 0.56 -0.7
Or see this region's nucleotide sequence