Strain Fitness in Variovorax sp. SCN45 around GFF7285

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7284 and GFF7285 are separated by 4 nucleotidesGFF7285 and GFF7286 are separated by 131 nucleotides GFF7284 - Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2), at 1,957 to 2,961 GFF7284 GFF7285 - Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2), at 2,966 to 3,871 GFF7285 GFF7286 - Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2), at 4,003 to 5,031 GFF7286 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1 2 3 4at 2.017 kb on - strandat 2.122 kb on + strand, within GFF7284at 2.152 kb on + strand, within GFF7284at 2.161 kb on + strand, within GFF7284at 2.161 kb on + strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.473 kb on + strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.477 kb on - strand, within GFF7284at 2.477 kb on - strand, within GFF7284at 2.477 kb on - strand, within GFF7284at 2.564 kb on + strand, within GFF7284at 2.564 kb on + strand, within GFF7284at 2.565 kb on - strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.654 kb on - strand, within GFF7284at 2.654 kb on - strand, within GFF7284at 2.654 kb on - strand, within GFF7284at 2.854 kb on + strand, within GFF7284at 2.929 kb on + strandat 2.929 kb on + strandat 2.929 kb on + strandat 2.929 kb on + strandat 2.930 kb on - strandat 3.204 kb on - strand, within GFF7285at 3.254 kb on + strand, within GFF7285at 3.254 kb on + strand, within GFF7285at 3.254 kb on + strand, within GFF7285at 3.255 kb on - strand, within GFF7285at 3.255 kb on - strand, within GFF7285at 3.255 kb on - strand, within GFF7285at 3.255 kb on - strand, within GFF7285at 3.255 kb on - strand, within GFF7285at 3.494 kb on + strand, within GFF7285at 3.494 kb on + strand, within GFF7285at 3.494 kb on + strand, within GFF7285at 3.494 kb on + strand, within GFF7285at 3.495 kb on - strand, within GFF7285at 3.495 kb on - strand, within GFF7285at 3.542 kb on + strand, within GFF7285at 3.542 kb on + strand, within GFF7285at 3.542 kb on + strand, within GFF7285at 3.542 kb on + strand, within GFF7285at 3.543 kb on - strand, within GFF7285at 3.543 kb on - strand, within GFF7285at 3.870 kb on - strandat 4.001 kb on - strandat 4.002 kb on + strandat 4.002 kb on + strandat 4.002 kb on + strandat 4.002 kb on + strandat 4.002 kb on + strandat 4.003 kb on - strandat 4.003 kb on - strandat 4.003 kb on - strandat 4.003 kb on - strandat 4.003 kb on - strandat 4.003 kb on - strandat 4.684 kb on + strand, within GFF7286at 4.684 kb on + strand, within GFF7286at 4.684 kb on + strand, within GFF7286at 4.684 kb on + strand, within GFF7286at 4.684 kb on + strand, within GFF7286at 4.684 kb on + strand, within GFF7286at 4.685 kb on - strand, within GFF7286at 4.685 kb on - strand, within GFF7286at 4.747 kb on + strand, within GFF7286

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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2,017 - +0.2
2,122 + GFF7284 0.16 +0.3
2,152 + GFF7284 0.19 -0.0
2,161 + GFF7284 0.20 +0.2
2,161 + GFF7284 0.20 -1.0
2,162 - GFF7284 0.20 +0.2
2,162 - GFF7284 0.20 +0.3
2,162 - GFF7284 0.20 +0.9
2,162 - GFF7284 0.20 +0.2
2,162 - GFF7284 0.20 -0.3
2,162 - GFF7284 0.20 -0.3
2,473 + GFF7284 0.51 -0.8
2,474 - GFF7284 0.51 +0.3
2,474 - GFF7284 0.51 +0.0
2,474 - GFF7284 0.51 +0.2
2,474 - GFF7284 0.51 -0.5
2,474 - GFF7284 0.51 -0.1
2,476 + GFF7284 0.52 -1.5
2,476 + GFF7284 0.52 -0.1
2,476 + GFF7284 0.52 +0.2
2,476 + GFF7284 0.52 +0.7
2,476 + GFF7284 0.52 -1.0
2,476 + GFF7284 0.52 +1.4
2,476 + GFF7284 0.52 -0.6
2,476 + GFF7284 0.52 +0.2
2,476 + GFF7284 0.52 -0.6
2,476 + GFF7284 0.52 -0.3
2,477 - GFF7284 0.52 -0.4
2,477 - GFF7284 0.52 -0.0
2,477 - GFF7284 0.52 +0.8
2,564 + GFF7284 0.60 +0.5
2,564 + GFF7284 0.60 +0.2
2,565 - GFF7284 0.60 -1.2
2,653 + GFF7284 0.69 +1.0
2,653 + GFF7284 0.69 +0.1
2,653 + GFF7284 0.69 +0.3
2,653 + GFF7284 0.69 -1.0
2,654 - GFF7284 0.69 -0.0
2,654 - GFF7284 0.69 +0.7
2,654 - GFF7284 0.69 -1.4
2,854 + GFF7284 0.89 -0.6
2,929 + -0.2
2,929 + -0.3
2,929 + +0.9
2,929 + +0.0
2,930 - +1.7
3,204 - GFF7285 0.26 -1.7
3,254 + GFF7285 0.32 -0.5
3,254 + GFF7285 0.32 +1.0
3,254 + GFF7285 0.32 -0.3
3,255 - GFF7285 0.32 +0.1
3,255 - GFF7285 0.32 -0.6
3,255 - GFF7285 0.32 +0.8
3,255 - GFF7285 0.32 -1.0
3,255 - GFF7285 0.32 +0.5
3,494 + GFF7285 0.58 +0.3
3,494 + GFF7285 0.58 +0.5
3,494 + GFF7285 0.58 -0.0
3,494 + GFF7285 0.58 -1.0
3,495 - GFF7285 0.58 -0.8
3,495 - GFF7285 0.58 +0.6
3,542 + GFF7285 0.64 -0.6
3,542 + GFF7285 0.64 +4.0
3,542 + GFF7285 0.64 +0.7
3,542 + GFF7285 0.64 +0.3
3,543 - GFF7285 0.64 -0.3
3,543 - GFF7285 0.64 -0.7
3,870 - -1.7
4,001 - -0.6
4,002 + +1.2
4,002 + +2.0
4,002 + +1.0
4,002 + +0.7
4,002 + +0.3
4,003 - -0.0
4,003 - -0.7
4,003 - -0.0
4,003 - -0.2
4,003 - -0.2
4,003 - -0.4
4,684 + GFF7286 0.66 -1.3
4,684 + GFF7286 0.66 -0.7
4,684 + GFF7286 0.66 -0.5
4,684 + GFF7286 0.66 +0.7
4,684 + GFF7286 0.66 +1.3
4,684 + GFF7286 0.66 -0.4
4,685 - GFF7286 0.66 -0.0
4,685 - GFF7286 0.66 -0.2
4,747 + GFF7286 0.72 +0.2

Or see this region's nucleotide sequence