Strain Fitness in Variovorax sp. SCN45 around GFF727

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF726 and GFF727 are separated by 37 nucleotidesGFF727 and GFF728 are separated by 31 nucleotidesGFF728 and GFF729 are separated by 16 nucleotides GFF726 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 784,352 to 785,749 GFF726 GFF727 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 785,787 to 786,410 GFF727 GFF728 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 786,442 to 787,290 GFF728 GFF729 - no description, at 787,307 to 787,546 GFF729 Position (kb) 785 786 787Strain fitness (log2 ratio) -2 -1 0 1 2at 784.793 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 785.228 kb on + strand, within GFF726at 785.229 kb on - strand, within GFF726at 785.312 kb on + strand, within GFF726at 785.312 kb on + strand, within GFF726at 785.313 kb on - strand, within GFF726at 785.313 kb on - strand, within GFF726at 785.313 kb on - strand, within GFF726at 785.330 kb on + strand, within GFF726at 785.330 kb on + strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.432 kb on + strand, within GFF726at 785.433 kb on - strand, within GFF726at 785.433 kb on - strand, within GFF726at 785.585 kb on + strand, within GFF726at 785.585 kb on + strand, within GFF726at 785.585 kb on + strand, within GFF726at 785.586 kb on - strand, within GFF726at 785.609 kb on + strand, within GFF726at 785.610 kb on - strandat 785.624 kb on + strandat 785.624 kb on + strandat 785.624 kb on + strandat 785.625 kb on - strandat 785.625 kb on - strandat 785.648 kb on + strandat 785.648 kb on + strandat 785.658 kb on - strandat 785.658 kb on - strandat 785.726 kb on + strandat 785.726 kb on + strandat 785.727 kb on - strandat 785.727 kb on - strandat 785.790 kb on + strandat 785.943 kb on + strand, within GFF727at 785.944 kb on - strand, within GFF727at 786.021 kb on + strand, within GFF727at 786.021 kb on + strand, within GFF727at 786.042 kb on + strand, within GFF727at 786.042 kb on + strand, within GFF727at 786.042 kb on + strand, within GFF727at 786.043 kb on - strand, within GFF727at 786.043 kb on - strand, within GFF727at 786.043 kb on - strand, within GFF727at 786.186 kb on + strand, within GFF727at 786.186 kb on + strand, within GFF727at 786.187 kb on - strand, within GFF727at 786.187 kb on - strand, within GFF727at 786.187 kb on - strand, within GFF727at 786.188 kb on + strand, within GFF727at 786.286 kb on - strand, within GFF727at 786.307 kb on - strand, within GFF727at 786.381 kb on + strandat 786.382 kb on - strandat 786.382 kb on - strandat 786.532 kb on + strand, within GFF728at 786.532 kb on + strand, within GFF728at 786.533 kb on - strand, within GFF728at 786.569 kb on - strand, within GFF728at 786.569 kb on - strand, within GFF728at 786.569 kb on - strand, within GFF728at 786.802 kb on + strand, within GFF728at 786.831 kb on + strand, within GFF728at 786.831 kb on + strand, within GFF728at 786.832 kb on - strand, within GFF728at 787.174 kb on + strand, within GFF728

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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784,793 + GFF726 0.32 +0.0
784,934 + GFF726 0.42 +0.8
784,934 + GFF726 0.42 -0.2
784,934 + GFF726 0.42 +1.8
784,934 + GFF726 0.42 +0.8
784,934 + GFF726 0.42 +0.0
784,934 + GFF726 0.42 +0.2
784,934 + GFF726 0.42 -2.0
785,228 + GFF726 0.63 -0.4
785,229 - GFF726 0.63 +1.5
785,312 + GFF726 0.69 +0.9
785,312 + GFF726 0.69 +2.4
785,313 - GFF726 0.69 -0.9
785,313 - GFF726 0.69 -0.3
785,313 - GFF726 0.69 -0.4
785,330 + GFF726 0.70 -0.9
785,330 + GFF726 0.70 +1.1
785,331 - GFF726 0.70 -0.5
785,331 - GFF726 0.70 -0.0
785,331 - GFF726 0.70 +0.9
785,331 - GFF726 0.70 -1.0
785,331 - GFF726 0.70 +0.3
785,432 + GFF726 0.77 +1.2
785,433 - GFF726 0.77 -0.2
785,433 - GFF726 0.77 +0.0
785,585 + GFF726 0.88 -0.6
785,585 + GFF726 0.88 +0.7
785,585 + GFF726 0.88 -0.1
785,586 - GFF726 0.88 -0.1
785,609 + GFF726 0.90 +0.1
785,610 - +1.2
785,624 + -0.1
785,624 + -0.4
785,624 + +0.9
785,625 - +0.3
785,625 - +0.3
785,648 + +1.1
785,648 + -0.4
785,658 - +0.7
785,658 - +0.8
785,726 + +0.8
785,726 + +1.2
785,727 - +0.2
785,727 - +0.9
785,790 + -0.4
785,943 + GFF727 0.25 -0.1
785,944 - GFF727 0.25 +0.2
786,021 + GFF727 0.38 +0.8
786,021 + GFF727 0.38 +1.8
786,042 + GFF727 0.41 -0.1
786,042 + GFF727 0.41 +0.1
786,042 + GFF727 0.41 +1.2
786,043 - GFF727 0.41 -0.4
786,043 - GFF727 0.41 -0.3
786,043 - GFF727 0.41 +0.3
786,186 + GFF727 0.64 -0.1
786,186 + GFF727 0.64 +0.1
786,187 - GFF727 0.64 +1.5
786,187 - GFF727 0.64 -0.6
786,187 - GFF727 0.64 +1.8
786,188 + GFF727 0.64 -0.1
786,286 - GFF727 0.80 +0.2
786,307 - GFF727 0.83 +0.8
786,381 + +0.5
786,382 - +0.2
786,382 - +0.3
786,532 + GFF728 0.11 +0.2
786,532 + GFF728 0.11 -1.0
786,533 - GFF728 0.11 -0.0
786,569 - GFF728 0.15 -0.5
786,569 - GFF728 0.15 +0.8
786,569 - GFF728 0.15 +0.1
786,802 + GFF728 0.42 +0.5
786,831 + GFF728 0.46 -0.6
786,831 + GFF728 0.46 +0.2
786,832 - GFF728 0.46 +0.5
787,174 + GFF728 0.86 +1.3

Or see this region's nucleotide sequence