Strain Fitness in Variovorax sp. SCN45 around GFF7262

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7261 and GFF7262 overlap by 4 nucleotidesGFF7262 and GFF7263 are separated by 6 nucleotides GFF7261 - 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26), at 7,992 to 9,428 GFF7261 GFF7262 - no description, at 9,425 to 9,718 GFF7262 GFF7263 - Malate dehydrogenase (EC 1.1.1.37), at 9,725 to 10,819 GFF7263 Position (kb) 9 10Strain fitness (log2 ratio) -1 0 1at 9.590 kb on + strand, within GFF7262at 9.590 kb on + strand, within GFF7262at 9.635 kb on + strand, within GFF7262at 9.683 kb on + strand, within GFF7262at 9.683 kb on + strand, within GFF7262at 9.707 kb on + strandat 9.761 kb on + strandat 9.860 kb on + strand, within GFF7263at 10.047 kb on - strand, within GFF7263at 10.164 kb on - strand, within GFF7263at 10.226 kb on - strand, within GFF7263at 10.568 kb on + strand, within GFF7263

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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9,590 + GFF7262 0.56 -0.5
9,590 + GFF7262 0.56 -0.5
9,635 + GFF7262 0.71 -0.3
9,683 + GFF7262 0.88 -0.8
9,683 + GFF7262 0.88 -0.5
9,707 + -1.3
9,761 + -0.4
9,860 + GFF7263 0.12 -0.5
10,047 - GFF7263 0.29 -1.1
10,164 - GFF7263 0.40 -1.7
10,226 - GFF7263 0.46 +0.6
10,568 + GFF7263 0.77 -0.3

Or see this region's nucleotide sequence