Strain Fitness in Variovorax sp. SCN45 around GFF726

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF725 and GFF726 are separated by 128 nucleotidesGFF726 and GFF727 are separated by 37 nucleotidesGFF727 and GFF728 are separated by 31 nucleotides GFF725 - TonB-dependent siderophore receptor, at 781,719 to 784,223 GFF725 GFF726 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 784,352 to 785,749 GFF726 GFF727 - FIG01964566: Predicted membrane protein, hemolysin III homolog, at 785,787 to 786,410 GFF727 GFF728 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 786,442 to 787,290 GFF728 Position (kb) 784 785 786Strain fitness (log2 ratio) -2 -1 0 1 2at 783.358 kb on - strand, within GFF725at 783.358 kb on - strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.424 kb on - strand, within GFF725at 783.462 kb on + strand, within GFF725at 783.462 kb on + strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.501 kb on + strand, within GFF725at 783.517 kb on - strand, within GFF725at 783.543 kb on + strand, within GFF725at 783.543 kb on + strand, within GFF725at 783.627 kb on + strand, within GFF725at 783.627 kb on + strand, within GFF725at 783.751 kb on - strand, within GFF725at 783.751 kb on - strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.843 kb on + strand, within GFF725at 783.910 kb on - strand, within GFF725at 783.910 kb on - strand, within GFF725at 783.910 kb on - strand, within GFF725at 783.910 kb on - strand, within GFF725at 784.050 kb on + strandat 784.050 kb on + strandat 784.051 kb on - strandat 784.051 kb on - strandat 784.078 kb on - strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.138 kb on - strandat 784.138 kb on - strandat 784.138 kb on - strandat 784.138 kb on - strandat 784.140 kb on + strandat 784.141 kb on - strandat 784.269 kb on + strandat 784.269 kb on + strandat 784.269 kb on + strandat 784.269 kb on + strandat 784.270 kb on - strandat 784.435 kb on - strandat 784.435 kb on - strandat 784.435 kb on - strandat 784.793 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 785.228 kb on + strand, within GFF726at 785.229 kb on - strand, within GFF726at 785.312 kb on + strand, within GFF726at 785.312 kb on + strand, within GFF726at 785.313 kb on - strand, within GFF726at 785.313 kb on - strand, within GFF726at 785.313 kb on - strand, within GFF726at 785.330 kb on + strand, within GFF726at 785.330 kb on + strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.331 kb on - strand, within GFF726at 785.432 kb on + strand, within GFF726at 785.433 kb on - strand, within GFF726at 785.433 kb on - strand, within GFF726at 785.585 kb on + strand, within GFF726at 785.585 kb on + strand, within GFF726at 785.585 kb on + strand, within GFF726at 785.586 kb on - strand, within GFF726at 785.609 kb on + strand, within GFF726at 785.610 kb on - strandat 785.624 kb on + strandat 785.624 kb on + strandat 785.624 kb on + strandat 785.625 kb on - strandat 785.625 kb on - strandat 785.648 kb on + strandat 785.648 kb on + strandat 785.658 kb on - strandat 785.658 kb on - strandat 785.726 kb on + strandat 785.726 kb on + strandat 785.727 kb on - strandat 785.727 kb on - strandat 785.790 kb on + strandat 785.943 kb on + strand, within GFF727at 785.944 kb on - strand, within GFF727at 786.021 kb on + strand, within GFF727at 786.021 kb on + strand, within GFF727at 786.042 kb on + strand, within GFF727at 786.042 kb on + strand, within GFF727at 786.042 kb on + strand, within GFF727at 786.043 kb on - strand, within GFF727at 786.043 kb on - strand, within GFF727at 786.043 kb on - strand, within GFF727at 786.186 kb on + strand, within GFF727at 786.186 kb on + strand, within GFF727at 786.187 kb on - strand, within GFF727at 786.187 kb on - strand, within GFF727at 786.187 kb on - strand, within GFF727at 786.188 kb on + strand, within GFF727at 786.286 kb on - strand, within GFF727at 786.307 kb on - strand, within GFF727at 786.381 kb on + strandat 786.382 kb on - strandat 786.382 kb on - strandat 786.532 kb on + strand, within GFF728at 786.532 kb on + strand, within GFF728at 786.533 kb on - strand, within GFF728at 786.569 kb on - strand, within GFF728at 786.569 kb on - strand, within GFF728at 786.569 kb on - strand, within GFF728

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
783,358 - GFF725 0.65 -0.6
783,358 - GFF725 0.65 -0.2
783,423 + GFF725 0.68 -0.1
783,423 + GFF725 0.68 +0.7
783,423 + GFF725 0.68 +0.0
783,423 + GFF725 0.68 -0.1
783,423 + GFF725 0.68 -0.7
783,424 - GFF725 0.68 +0.1
783,462 + GFF725 0.70 +1.0
783,462 + GFF725 0.70 -0.8
783,463 - GFF725 0.70 +2.1
783,463 - GFF725 0.70 -0.5
783,463 - GFF725 0.70 -0.2
783,463 - GFF725 0.70 +1.4
783,463 - GFF725 0.70 -0.1
783,501 + GFF725 0.71 +0.4
783,517 - GFF725 0.72 +0.0
783,543 + GFF725 0.73 +0.5
783,543 + GFF725 0.73 +1.2
783,627 + GFF725 0.76 +0.3
783,627 + GFF725 0.76 +0.1
783,751 - GFF725 0.81 -0.0
783,751 - GFF725 0.81 -0.4
783,756 + GFF725 0.81 +0.1
783,756 + GFF725 0.81 -0.8
783,756 + GFF725 0.81 -0.7
783,756 + GFF725 0.81 -0.0
783,756 + GFF725 0.81 -0.2
783,756 + GFF725 0.81 -0.9
783,756 + GFF725 0.81 -0.1
783,756 + GFF725 0.81 -0.4
783,756 + GFF725 0.81 -0.1
783,757 - GFF725 0.81 +0.2
783,757 - GFF725 0.81 +0.0
783,757 - GFF725 0.81 +0.3
783,757 - GFF725 0.81 -0.4
783,757 - GFF725 0.81 +0.9
783,757 - GFF725 0.81 +0.2
783,843 + GFF725 0.85 +1.0
783,910 - GFF725 0.87 +0.1
783,910 - GFF725 0.87 +0.2
783,910 - GFF725 0.87 +0.2
783,910 - GFF725 0.87 +0.5
784,050 + +1.0
784,050 + -0.0
784,051 - +0.3
784,051 - -0.2
784,078 - +0.0
784,137 + -0.5
784,137 + -0.3
784,137 + +0.2
784,137 + -0.3
784,137 + -2.0
784,137 + +0.4
784,138 - -0.7
784,138 - +0.6
784,138 - +0.7
784,138 - +0.2
784,140 + +0.2
784,141 - -0.2
784,269 + -0.4
784,269 + -0.2
784,269 + +0.0
784,269 + +0.6
784,270 - +0.2
784,435 - -0.5
784,435 - -0.1
784,435 - -0.6
784,793 + GFF726 0.32 +0.0
784,934 + GFF726 0.42 +0.8
784,934 + GFF726 0.42 -0.2
784,934 + GFF726 0.42 +1.8
784,934 + GFF726 0.42 +0.8
784,934 + GFF726 0.42 +0.0
784,934 + GFF726 0.42 +0.2
784,934 + GFF726 0.42 -2.0
785,228 + GFF726 0.63 -0.4
785,229 - GFF726 0.63 +1.5
785,312 + GFF726 0.69 +0.9
785,312 + GFF726 0.69 +2.4
785,313 - GFF726 0.69 -0.9
785,313 - GFF726 0.69 -0.3
785,313 - GFF726 0.69 -0.4
785,330 + GFF726 0.70 -0.9
785,330 + GFF726 0.70 +1.1
785,331 - GFF726 0.70 -0.5
785,331 - GFF726 0.70 -0.0
785,331 - GFF726 0.70 +0.9
785,331 - GFF726 0.70 -1.0
785,331 - GFF726 0.70 +0.3
785,432 + GFF726 0.77 +1.2
785,433 - GFF726 0.77 -0.2
785,433 - GFF726 0.77 +0.0
785,585 + GFF726 0.88 -0.6
785,585 + GFF726 0.88 +0.7
785,585 + GFF726 0.88 -0.1
785,586 - GFF726 0.88 -0.1
785,609 + GFF726 0.90 +0.1
785,610 - +1.2
785,624 + -0.1
785,624 + -0.4
785,624 + +0.9
785,625 - +0.3
785,625 - +0.3
785,648 + +1.1
785,648 + -0.4
785,658 - +0.7
785,658 - +0.8
785,726 + +0.8
785,726 + +1.2
785,727 - +0.2
785,727 - +0.9
785,790 + -0.4
785,943 + GFF727 0.25 -0.1
785,944 - GFF727 0.25 +0.2
786,021 + GFF727 0.38 +0.8
786,021 + GFF727 0.38 +1.8
786,042 + GFF727 0.41 -0.1
786,042 + GFF727 0.41 +0.1
786,042 + GFF727 0.41 +1.2
786,043 - GFF727 0.41 -0.4
786,043 - GFF727 0.41 -0.3
786,043 - GFF727 0.41 +0.3
786,186 + GFF727 0.64 -0.1
786,186 + GFF727 0.64 +0.1
786,187 - GFF727 0.64 +1.5
786,187 - GFF727 0.64 -0.6
786,187 - GFF727 0.64 +1.8
786,188 + GFF727 0.64 -0.1
786,286 - GFF727 0.80 +0.2
786,307 - GFF727 0.83 +0.8
786,381 + +0.5
786,382 - +0.2
786,382 - +0.3
786,532 + GFF728 0.11 +0.2
786,532 + GFF728 0.11 -1.0
786,533 - GFF728 0.11 -0.0
786,569 - GFF728 0.15 -0.5
786,569 - GFF728 0.15 +0.8
786,569 - GFF728 0.15 +0.1

Or see this region's nucleotide sequence