Strain Fitness in Variovorax sp. SCN45 around GFF724

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF722 and GFF723 are separated by 76 nucleotidesGFF723 and GFF724 overlap by 4 nucleotidesGFF724 and GFF725 are separated by 96 nucleotides GFF722 - hypothetical protein, at 779,271 to 780,047 GFF722 GFF723 - RNA polymerase ECF-type sigma factor, at 780,124 to 780,633 GFF723 GFF724 - Fe2+-dicitrate sensor, membrane component, at 780,630 to 781,622 GFF724 GFF725 - TonB-dependent siderophore receptor, at 781,719 to 784,223 GFF725 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 779.730 kb on + strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.731 kb on - strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.850 kb on + strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.851 kb on - strand, within GFF722at 779.925 kb on + strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.926 kb on - strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.928 kb on + strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 779.929 kb on - strand, within GFF722at 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.169 kb on + strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.170 kb on - strandat 780.284 kb on + strand, within GFF723at 780.284 kb on + strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.285 kb on - strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.313 kb on + strand, within GFF723at 780.538 kb on + strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.539 kb on - strand, within GFF723at 780.589 kb on + strandat 780.589 kb on + strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.590 kb on - strandat 780.927 kb on + strand, within GFF724at 780.928 kb on - strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.539 kb on + strandat 781.539 kb on + strandat 781.540 kb on - strandat 781.540 kb on - strandat 781.597 kb on - strandat 782.004 kb on + strand, within GFF725at 782.005 kb on - strand, within GFF725at 782.080 kb on - strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.209 kb on - strand, within GFF725at 782.209 kb on - strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.359 kb on - strand, within GFF725at 782.359 kb on - strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.416 kb on - strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.446 kb on - strand, within GFF725

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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779,730 + GFF722 0.59 +0.6
779,731 - GFF722 0.59 +1.3
779,731 - GFF722 0.59 -0.8
779,731 - GFF722 0.59 -1.7
779,850 + GFF722 0.75 +0.3
779,850 + GFF722 0.75 +0.1
779,850 + GFF722 0.75 +0.4
779,850 + GFF722 0.75 +0.3
779,850 + GFF722 0.75 -1.1
779,851 - GFF722 0.75 +0.6
779,851 - GFF722 0.75 -1.1
779,925 + GFF722 0.84 -0.1
779,926 - GFF722 0.84 -0.3
779,926 - GFF722 0.84 -0.6
779,928 + GFF722 0.85 -0.9
779,928 + GFF722 0.85 +0.9
779,928 + GFF722 0.85 +1.0
779,929 - GFF722 0.85 -0.2
779,929 - GFF722 0.85 +0.1
779,929 - GFF722 0.85 +0.5
779,929 - GFF722 0.85 +2.4
779,929 - GFF722 0.85 -0.9
779,929 - GFF722 0.85 -0.4
779,929 - GFF722 0.85 +0.1
780,169 + -0.1
780,169 + +0.2
780,169 + +1.0
780,169 + -0.8
780,170 - -0.4
780,170 - -0.4
780,170 - -0.6
780,284 + GFF723 0.31 -0.5
780,284 + GFF723 0.31 +0.1
780,285 - GFF723 0.32 -0.8
780,285 - GFF723 0.32 +1.3
780,285 - GFF723 0.32 -0.7
780,313 + GFF723 0.37 +0.3
780,313 + GFF723 0.37 -0.6
780,313 + GFF723 0.37 +1.6
780,538 + GFF723 0.81 +0.4
780,539 - GFF723 0.81 +0.8
780,539 - GFF723 0.81 -0.4
780,539 - GFF723 0.81 -1.2
780,589 + +0.9
780,589 + +1.3
780,590 - +1.0
780,590 - -0.2
780,590 - +0.3
780,590 - +1.8
780,927 + GFF724 0.30 +0.8
780,928 - GFF724 0.30 +0.7
781,410 + GFF724 0.79 -0.6
781,410 + GFF724 0.79 +0.7
781,410 + GFF724 0.79 +1.6
781,411 - GFF724 0.79 -1.4
781,411 - GFF724 0.79 +0.3
781,411 - GFF724 0.79 +1.8
781,411 - GFF724 0.79 +0.8
781,539 + -0.2
781,539 + +0.7
781,540 - +1.4
781,540 - +0.5
781,597 - +0.9
782,004 + GFF725 0.11 -0.8
782,005 - GFF725 0.11 -0.9
782,080 - GFF725 0.14 +0.6
782,208 + GFF725 0.20 +1.0
782,208 + GFF725 0.20 -0.0
782,208 + GFF725 0.20 -0.3
782,208 + GFF725 0.20 +1.5
782,209 - GFF725 0.20 -2.0
782,209 - GFF725 0.20 -0.2
782,358 + GFF725 0.26 +0.1
782,358 + GFF725 0.26 +1.0
782,358 + GFF725 0.26 -0.3
782,358 + GFF725 0.26 +0.4
782,358 + GFF725 0.26 +0.2
782,358 + GFF725 0.26 -0.2
782,358 + GFF725 0.26 +0.3
782,358 + GFF725 0.26 +0.2
782,359 - GFF725 0.26 -0.4
782,359 - GFF725 0.26 -0.2
782,382 + GFF725 0.26 -0.2
782,382 + GFF725 0.26 -0.1
782,382 + GFF725 0.26 -1.1
782,382 + GFF725 0.26 -0.6
782,382 + GFF725 0.26 -1.2
782,382 + GFF725 0.26 +0.8
782,382 + GFF725 0.26 +0.1
782,382 + GFF725 0.26 -0.1
782,382 + GFF725 0.26 +0.3
782,383 - GFF725 0.27 -0.2
782,383 - GFF725 0.27 +0.8
782,383 - GFF725 0.27 +0.7
782,383 - GFF725 0.27 -0.3
782,388 + GFF725 0.27 +1.0
782,388 + GFF725 0.27 -0.2
782,388 + GFF725 0.27 -0.3
782,388 + GFF725 0.27 +0.8
782,415 + GFF725 0.28 +0.6
782,415 + GFF725 0.28 +0.6
782,415 + GFF725 0.28 +0.3
782,416 - GFF725 0.28 -0.5
782,445 + GFF725 0.29 +0.1
782,445 + GFF725 0.29 -0.3
782,445 + GFF725 0.29 -0.9
782,445 + GFF725 0.29 +0.5
782,446 - GFF725 0.29 -0.1

Or see this region's nucleotide sequence