Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7209 and GFF7210 are separated by 49 nucleotides GFF7210 and GFF7211 overlap by 11 nucleotides GFF7211 and GFF7212 are separated by 215 nucleotides
GFF7209 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 25,322 to 26,347
GFF7209
GFF7210 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 26,397 to 27,191
GFF7210
GFF7211 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 27,181 to 28,599
GFF7211
GFF7212 - Nitrilotriacetate monooxygenase [FMNH2], at 28,815 to 30,170
GFF7212
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1
2 at 26.194 kb on - strand, within GFF7209 at 26.951 kb on - strand, within GFF7210 at 27.056 kb on - strand, within GFF7210 at 27.265 kb on + strand at 27.713 kb on + strand, within GFF7211 at 27.714 kb on - strand, within GFF7211 at 27.750 kb on - strand, within GFF7211 at 27.828 kb on - strand, within GFF7211 at 28.271 kb on + strand, within GFF7211 at 28.311 kb on + strand, within GFF7211 at 28.311 kb on + strand, within GFF7211 at 28.376 kb on + strand, within GFF7211 at 28.376 kb on + strand, within GFF7211 at 28.376 kb on + strand, within GFF7211 at 28.377 kb on - strand, within GFF7211 at 28.377 kb on - strand, within GFF7211 at 28.526 kb on + strand at 28.544 kb on + strand at 28.682 kb on + strand at 28.724 kb on - strand at 28.782 kb on + strand at 28.782 kb on + strand at 28.932 kb on + strand at 28.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 26,194 - GFF7209 0.85 +1.7 26,951 - GFF7210 0.70 -0.2 27,056 - GFF7210 0.83 -0.2 27,265 + +1.1 27,713 + GFF7211 0.37 -0.2 27,714 - GFF7211 0.38 +0.3 27,750 - GFF7211 0.40 -0.6 27,828 - GFF7211 0.46 -0.1 28,271 + GFF7211 0.77 -0.6 28,311 + GFF7211 0.80 +0.6 28,311 + GFF7211 0.80 +2.6 28,376 + GFF7211 0.84 -0.6 28,376 + GFF7211 0.84 -0.8 28,376 + GFF7211 0.84 +0.2 28,377 - GFF7211 0.84 +1.4 28,377 - GFF7211 0.84 +1.7 28,526 + -0.2 28,544 + +0.0 28,682 + +0.3 28,724 - +0.0 28,782 + -0.4 28,782 + -1.1 28,932 + +1.6 28,932 + -0.0
Or see this region's nucleotide sequence