Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7199 and GFF7200 are separated by 16 nucleotides GFF7200 and GFF7201 overlap by 4 nucleotides GFF7201 and GFF7202 are separated by 17 nucleotides GFF7202 and GFF7203 are separated by 7 nucleotides
GFF7199 - Alkanesulfonates-binding protein, at 17,481 to 18,575
GFF7199
GFF7200 - Alkanesulfonates transport system permease protein, at 18,592 to 19,440
GFF7200
GFF7201 - Alkanesulfonates transport system permease protein, at 19,437 to 20,252
GFF7201
GFF7202 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 20,270 to 21,142
GFF7202
GFF7203 - Two-component transcriptional response regulator, LuxR family, at 21,150 to 22,622
GFF7203
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.475 kb on - strand at 18.513 kb on + strand at 18.513 kb on + strand at 18.513 kb on + strand at 18.949 kb on + strand, within GFF7200 at 18.949 kb on + strand, within GFF7200 at 18.950 kb on - strand, within GFF7200 at 18.950 kb on - strand, within GFF7200 at 18.950 kb on - strand, within GFF7200 at 19.045 kb on + strand, within GFF7200 at 19.046 kb on - strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.144 kb on + strand, within GFF7200 at 19.145 kb on - strand, within GFF7200 at 19.145 kb on - strand, within GFF7200 at 19.145 kb on - strand, within GFF7200 at 19.145 kb on - strand, within GFF7200 at 19.145 kb on - strand, within GFF7200 at 19.151 kb on - strand, within GFF7200 at 19.291 kb on + strand, within GFF7200 at 19.292 kb on - strand, within GFF7200 at 20.032 kb on - strand, within GFF7201 at 20.046 kb on + strand, within GFF7201 at 20.047 kb on - strand, within GFF7201 at 20.333 kb on + strand at 20.333 kb on + strand at 20.333 kb on + strand at 20.333 kb on + strand at 20.334 kb on - strand at 20.334 kb on - strand at 20.484 kb on - strand, within GFF7202 at 20.622 kb on - strand, within GFF7202 at 20.622 kb on - strand, within GFF7202 at 21.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,475 - -0.2 18,513 + -2.1 18,513 + -0.8 18,513 + -0.0 18,949 + GFF7200 0.42 -1.0 18,949 + GFF7200 0.42 -0.4 18,950 - GFF7200 0.42 -0.6 18,950 - GFF7200 0.42 -0.4 18,950 - GFF7200 0.42 -0.1 19,045 + GFF7200 0.53 +0.3 19,046 - GFF7200 0.53 -0.4 19,144 + GFF7200 0.65 -2.2 19,144 + GFF7200 0.65 -0.0 19,144 + GFF7200 0.65 -0.7 19,144 + GFF7200 0.65 +0.4 19,144 + GFF7200 0.65 -0.4 19,144 + GFF7200 0.65 +1.0 19,144 + GFF7200 0.65 -0.8 19,145 - GFF7200 0.65 +1.6 19,145 - GFF7200 0.65 +0.2 19,145 - GFF7200 0.65 -0.6 19,145 - GFF7200 0.65 +0.2 19,145 - GFF7200 0.65 +0.6 19,151 - GFF7200 0.66 +0.4 19,291 + GFF7200 0.82 +0.0 19,292 - GFF7200 0.82 -0.2 20,032 - GFF7201 0.73 -0.3 20,046 + GFF7201 0.75 -0.9 20,047 - GFF7201 0.75 -0.3 20,333 + -0.6 20,333 + +2.1 20,333 + -0.7 20,333 + +0.4 20,334 - -0.0 20,334 - -0.6 20,484 - GFF7202 0.25 -1.4 20,622 - GFF7202 0.40 -0.4 20,622 - GFF7202 0.40 -0.1 21,152 - +0.3
Or see this region's nucleotide sequence