Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7116 and GFF7117 overlap by 4 nucleotides GFF7117 and GFF7118 overlap by 4 nucleotides GFF7118 and GFF7119 are separated by 6 nucleotides GFF7119 and GFF7120 are separated by 1 nucleotides
GFF7116 - 2,3-dihydroxybiphenyl 1,2-dioxygenase (EC 1.13.11.39), at 34,498 to 35,412
GFF7116
GFF7117 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 35,409 to 36,239
GFF7117
GFF7118 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 36,236 to 37,177
GFF7118
GFF7119 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 37,184 to 37,660
GFF7119
GFF7120 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 37,662 to 38,906
GFF7120
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.315 kb on + strand, within GFF7116 at 35.315 kb on + strand, within GFF7116 at 35.316 kb on - strand, within GFF7116 at 35.316 kb on - strand, within GFF7116 at 35.316 kb on - strand, within GFF7116 at 35.316 kb on - strand, within GFF7116 at 35.357 kb on + strand at 35.357 kb on + strand at 35.358 kb on - strand at 35.582 kb on + strand, within GFF7117 at 35.583 kb on + strand, within GFF7117 at 35.583 kb on + strand, within GFF7117 at 35.583 kb on + strand, within GFF7117 at 35.583 kb on + strand, within GFF7117 at 35.583 kb on + strand, within GFF7117 at 35.583 kb on + strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.584 kb on - strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.771 kb on + strand, within GFF7117 at 35.772 kb on - strand, within GFF7117 at 35.772 kb on - strand, within GFF7117 at 35.772 kb on - strand, within GFF7117 at 35.772 kb on - strand, within GFF7117 at 35.797 kb on + strand, within GFF7117 at 35.971 kb on + strand, within GFF7117 at 35.992 kb on + strand, within GFF7117 at 35.992 kb on + strand, within GFF7117 at 35.992 kb on + strand, within GFF7117 at 35.992 kb on + strand, within GFF7117 at 35.993 kb on - strand, within GFF7117 at 35.993 kb on - strand, within GFF7117 at 36.004 kb on + strand, within GFF7117 at 36.094 kb on + strand, within GFF7117 at 36.094 kb on + strand, within GFF7117 at 36.095 kb on - strand, within GFF7117 at 36.095 kb on - strand, within GFF7117 at 36.095 kb on - strand, within GFF7117 at 36.095 kb on - strand, within GFF7117 at 36.109 kb on + strand, within GFF7117 at 36.175 kb on + strand at 36.175 kb on + strand at 36.175 kb on + strand at 36.176 kb on - strand at 36.176 kb on - strand at 36.176 kb on - strand at 36.176 kb on - strand at 36.186 kb on + strand at 36.186 kb on + strand at 36.186 kb on + strand at 36.186 kb on + strand at 36.187 kb on - strand at 36.230 kb on + strand at 36.230 kb on + strand at 36.230 kb on + strand at 36.230 kb on + strand at 36.230 kb on + strand at 36.230 kb on + strand at 36.231 kb on - strand at 36.231 kb on - strand at 36.231 kb on - strand at 36.447 kb on + strand, within GFF7118 at 36.447 kb on + strand, within GFF7118 at 36.447 kb on + strand, within GFF7118 at 36.448 kb on - strand, within GFF7118 at 36.448 kb on - strand, within GFF7118 at 36.448 kb on - strand, within GFF7118 at 36.921 kb on - strand, within GFF7118 at 36.924 kb on + strand, within GFF7118 at 36.924 kb on + strand, within GFF7118 at 36.924 kb on + strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.925 kb on - strand, within GFF7118 at 36.972 kb on + strand, within GFF7118 at 36.972 kb on + strand, within GFF7118 at 36.972 kb on + strand, within GFF7118 at 36.972 kb on + strand, within GFF7118 at 36.973 kb on - strand, within GFF7118 at 36.973 kb on - strand, within GFF7118 at 37.032 kb on + strand, within GFF7118 at 37.185 kb on + strand at 37.185 kb on + strand at 37.290 kb on + strand, within GFF7119 at 37.290 kb on + strand, within GFF7119 at 37.290 kb on + strand, within GFF7119 at 37.290 kb on + strand, within GFF7119 at 37.290 kb on + strand, within GFF7119 at 37.290 kb on + strand, within GFF7119 at 37.291 kb on - strand, within GFF7119 at 37.291 kb on - strand, within GFF7119 at 37.291 kb on - strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.431 kb on + strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.432 kb on - strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.491 kb on + strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.492 kb on - strand, within GFF7119 at 37.545 kb on + strand, within GFF7119 at 37.546 kb on - strand, within GFF7119 at 37.546 kb on - strand, within GFF7119 at 37.567 kb on - strand, within GFF7119 at 37.567 kb on - strand, within GFF7119 at 37.611 kb on + strand, within GFF7119 at 37.611 kb on + strand, within GFF7119 at 37.611 kb on + strand, within GFF7119 at 37.638 kb on + strand at 37.638 kb on + strand at 37.639 kb on - strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.675 kb on + strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.676 kb on - strand at 37.684 kb on + strand at 37.685 kb on - strand at 37.685 kb on - strand at 37.840 kb on + strand, within GFF7120 at 37.840 kb on + strand, within GFF7120 at 37.840 kb on + strand, within GFF7120 at 37.840 kb on + strand, within GFF7120 at 37.841 kb on - strand, within GFF7120 at 37.918 kb on + strand, within GFF7120 at 37.918 kb on + strand, within GFF7120 at 37.918 kb on + strand, within GFF7120 at 37.918 kb on + strand, within GFF7120 at 37.918 kb on + strand, within GFF7120 at 37.918 kb on + strand, within GFF7120 at 37.919 kb on - strand, within GFF7120 at 37.919 kb on - strand, within GFF7120 at 37.919 kb on - strand, within GFF7120 at 37.919 kb on - strand, within GFF7120 at 38.092 kb on - strand, within GFF7120 at 38.119 kb on + strand, within GFF7120 at 38.119 kb on + strand, within GFF7120 at 38.119 kb on + strand, within GFF7120 at 38.119 kb on + strand, within GFF7120 at 38.120 kb on - strand, within GFF7120 at 38.120 kb on - strand, within GFF7120 at 38.120 kb on - strand, within GFF7120
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,315 + GFF7116 0.89 +0.0 35,315 + GFF7116 0.89 -0.7 35,316 - GFF7116 0.89 -0.1 35,316 - GFF7116 0.89 +0.6 35,316 - GFF7116 0.89 +0.8 35,316 - GFF7116 0.89 +0.8 35,357 + -0.5 35,357 + -0.0 35,358 - -1.2 35,582 + GFF7117 0.21 +0.0 35,583 + GFF7117 0.21 +1.8 35,583 + GFF7117 0.21 -0.8 35,583 + GFF7117 0.21 -0.1 35,583 + GFF7117 0.21 +1.0 35,583 + GFF7117 0.21 +0.0 35,583 + GFF7117 0.21 +0.0 35,584 - GFF7117 0.21 -0.2 35,584 - GFF7117 0.21 -1.6 35,584 - GFF7117 0.21 +1.1 35,584 - GFF7117 0.21 +0.1 35,584 - GFF7117 0.21 -1.3 35,584 - GFF7117 0.21 -0.8 35,584 - GFF7117 0.21 -0.5 35,584 - GFF7117 0.21 +0.9 35,584 - GFF7117 0.21 +0.2 35,584 - GFF7117 0.21 -0.5 35,584 - GFF7117 0.21 +1.8 35,771 + GFF7117 0.44 -0.3 35,771 + GFF7117 0.44 +0.0 35,771 + GFF7117 0.44 -0.5 35,771 + GFF7117 0.44 -0.9 35,771 + GFF7117 0.44 +0.3 35,771 + GFF7117 0.44 -0.2 35,771 + GFF7117 0.44 +0.8 35,772 - GFF7117 0.44 -0.4 35,772 - GFF7117 0.44 +0.2 35,772 - GFF7117 0.44 +0.6 35,772 - GFF7117 0.44 +1.2 35,797 + GFF7117 0.47 +1.3 35,971 + GFF7117 0.68 -0.3 35,992 + GFF7117 0.70 -0.7 35,992 + GFF7117 0.70 -0.5 35,992 + GFF7117 0.70 -0.1 35,992 + GFF7117 0.70 -0.8 35,993 - GFF7117 0.70 -1.1 35,993 - GFF7117 0.70 -0.2 36,004 + GFF7117 0.72 -1.4 36,094 + GFF7117 0.82 +0.0 36,094 + GFF7117 0.82 +0.5 36,095 - GFF7117 0.83 -0.4 36,095 - GFF7117 0.83 +0.2 36,095 - GFF7117 0.83 +0.3 36,095 - GFF7117 0.83 -0.8 36,109 + GFF7117 0.84 +1.4 36,175 + +0.8 36,175 + -0.1 36,175 + -1.5 36,176 - -0.4 36,176 - -1.3 36,176 - -1.4 36,176 - -0.8 36,186 + +1.3 36,186 + -0.2 36,186 + -0.3 36,186 + -0.5 36,187 - +0.6 36,230 + +0.6 36,230 + +0.0 36,230 + -1.8 36,230 + -0.1 36,230 + -0.6 36,230 + +0.6 36,231 - +0.2 36,231 - -0.2 36,231 - +0.1 36,447 + GFF7118 0.22 +0.6 36,447 + GFF7118 0.22 +0.2 36,447 + GFF7118 0.22 -0.2 36,448 - GFF7118 0.23 +0.6 36,448 - GFF7118 0.23 -0.1 36,448 - GFF7118 0.23 +2.1 36,921 - GFF7118 0.73 +0.4 36,924 + GFF7118 0.73 -0.0 36,924 + GFF7118 0.73 -0.3 36,924 + GFF7118 0.73 -0.2 36,925 - GFF7118 0.73 +0.4 36,925 - GFF7118 0.73 +0.5 36,925 - GFF7118 0.73 -0.0 36,925 - GFF7118 0.73 -0.6 36,925 - GFF7118 0.73 +0.2 36,925 - GFF7118 0.73 +0.0 36,925 - GFF7118 0.73 -0.8 36,925 - GFF7118 0.73 +0.1 36,925 - GFF7118 0.73 -0.4 36,972 + GFF7118 0.78 +0.2 36,972 + GFF7118 0.78 -2.4 36,972 + GFF7118 0.78 -0.1 36,972 + GFF7118 0.78 +0.5 36,973 - GFF7118 0.78 -0.4 36,973 - GFF7118 0.78 -0.4 37,032 + GFF7118 0.85 -0.6 37,185 + -0.6 37,185 + +0.4 37,290 + GFF7119 0.22 -0.6 37,290 + GFF7119 0.22 +2.2 37,290 + GFF7119 0.22 -1.2 37,290 + GFF7119 0.22 -1.1 37,290 + GFF7119 0.22 +0.2 37,290 + GFF7119 0.22 +0.8 37,291 - GFF7119 0.22 +0.1 37,291 - GFF7119 0.22 -0.4 37,291 - GFF7119 0.22 -0.4 37,431 + GFF7119 0.52 -0.0 37,431 + GFF7119 0.52 -0.3 37,431 + GFF7119 0.52 -0.0 37,431 + GFF7119 0.52 -0.5 37,431 + GFF7119 0.52 +0.6 37,431 + GFF7119 0.52 -0.3 37,431 + GFF7119 0.52 -0.7 37,431 + GFF7119 0.52 +0.1 37,432 - GFF7119 0.52 -0.2 37,432 - GFF7119 0.52 -2.9 37,432 - GFF7119 0.52 -0.6 37,432 - GFF7119 0.52 +0.6 37,432 - GFF7119 0.52 -0.4 37,432 - GFF7119 0.52 +0.4 37,432 - GFF7119 0.52 +0.1 37,432 - GFF7119 0.52 +0.0 37,491 + GFF7119 0.64 -0.5 37,491 + GFF7119 0.64 -0.1 37,491 + GFF7119 0.64 -0.3 37,491 + GFF7119 0.64 +0.2 37,491 + GFF7119 0.64 -0.9 37,491 + GFF7119 0.64 +0.8 37,491 + GFF7119 0.64 +0.8 37,491 + GFF7119 0.64 -0.2 37,491 + GFF7119 0.64 -0.3 37,491 + GFF7119 0.64 -0.2 37,491 + GFF7119 0.64 +0.1 37,491 + GFF7119 0.64 +0.6 37,491 + GFF7119 0.64 -0.3 37,491 + GFF7119 0.64 -1.1 37,491 + GFF7119 0.64 -1.1 37,491 + GFF7119 0.64 +0.2 37,491 + GFF7119 0.64 +0.6 37,491 + GFF7119 0.64 -0.0 37,492 - GFF7119 0.65 +0.8 37,492 - GFF7119 0.65 -0.9 37,492 - GFF7119 0.65 -1.0 37,492 - GFF7119 0.65 +0.0 37,492 - GFF7119 0.65 -1.2 37,492 - GFF7119 0.65 -0.8 37,492 - GFF7119 0.65 +1.7 37,492 - GFF7119 0.65 +0.0 37,492 - GFF7119 0.65 +1.0 37,492 - GFF7119 0.65 +0.9 37,492 - GFF7119 0.65 -1.2 37,492 - GFF7119 0.65 -0.3 37,492 - GFF7119 0.65 -0.8 37,492 - GFF7119 0.65 -0.5 37,492 - GFF7119 0.65 -0.3 37,492 - GFF7119 0.65 -0.0 37,492 - GFF7119 0.65 -1.1 37,492 - GFF7119 0.65 -0.6 37,492 - GFF7119 0.65 -0.4 37,492 - GFF7119 0.65 -1.2 37,492 - GFF7119 0.65 -0.3 37,545 + GFF7119 0.76 -0.7 37,546 - GFF7119 0.76 +0.1 37,546 - GFF7119 0.76 -0.4 37,567 - GFF7119 0.80 -0.2 37,567 - GFF7119 0.80 +0.5 37,611 + GFF7119 0.90 +0.1 37,611 + GFF7119 0.90 +0.1 37,611 + GFF7119 0.90 -0.3 37,638 + +0.2 37,638 + +0.3 37,639 - -0.6 37,675 + -0.3 37,675 + -1.4 37,675 + -0.3 37,675 + +0.6 37,675 + -0.8 37,675 + +0.7 37,675 + +0.5 37,675 + -0.8 37,675 + +0.1 37,675 + -1.0 37,676 - -0.5 37,676 - -0.2 37,676 - -1.1 37,676 - -0.2 37,676 - -0.4 37,676 - -1.0 37,676 - +0.2 37,676 - +0.8 37,676 - +0.0 37,676 - +0.1 37,676 - -0.7 37,684 + -0.3 37,685 - -0.4 37,685 - +0.1 37,840 + GFF7120 0.14 +0.1 37,840 + GFF7120 0.14 -0.7 37,840 + GFF7120 0.14 +0.0 37,840 + GFF7120 0.14 -0.6 37,841 - GFF7120 0.14 -0.4 37,918 + GFF7120 0.21 -0.2 37,918 + GFF7120 0.21 -1.6 37,918 + GFF7120 0.21 +0.2 37,918 + GFF7120 0.21 -0.8 37,918 + GFF7120 0.21 -1.8 37,918 + GFF7120 0.21 +0.3 37,919 - GFF7120 0.21 -0.5 37,919 - GFF7120 0.21 -1.7 37,919 - GFF7120 0.21 +0.6 37,919 - GFF7120 0.21 +0.0 38,092 - GFF7120 0.35 -1.3 38,119 + GFF7120 0.37 -0.6 38,119 + GFF7120 0.37 -0.6 38,119 + GFF7120 0.37 +0.2 38,119 + GFF7120 0.37 -0.8 38,120 - GFF7120 0.37 +0.6 38,120 - GFF7120 0.37 -0.8 38,120 - GFF7120 0.37 -0.8
Or see this region's nucleotide sequence