Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7104 and GFF7105 overlap by 4 nucleotides GFF7105 and GFF7106 are separated by 81 nucleotides GFF7106 and GFF7107 overlap by 4 nucleotides
GFF7104 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68), at 22,093 to 22,743
GFF7104
GFF7105 - Homoprotocatechuate degradative operon repressor, at 22,740 to 23,171
GFF7105
GFF7106 - BUG/TctC family periplasmic protein, at 23,253 to 24,233
GFF7106
GFF7107 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 24,230 to 25,900
GFF7107
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 22.334 kb on - strand, within GFF7104 at 22.439 kb on + strand, within GFF7104 at 22.440 kb on - strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.638 kb on - strand, within GFF7104 at 22.638 kb on - strand, within GFF7104 at 22.703 kb on + strand at 22.703 kb on + strand at 22.703 kb on + strand at 22.703 kb on + strand at 22.703 kb on + strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.707 kb on - strand at 22.766 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.828 kb on + strand, within GFF7105 at 22.828 kb on + strand, within GFF7105 at 23.171 kb on + strand at 23.171 kb on + strand at 23.174 kb on + strand at 23.228 kb on + strand at 23.229 kb on - strand at 23.283 kb on - strand at 23.283 kb on - strand at 23.283 kb on - strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.422 kb on + strand, within GFF7106 at 23.423 kb on - strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.909 kb on - strand, within GFF7106 at 23.923 kb on + strand, within GFF7106 at 24.209 kb on - strand at 24.260 kb on - strand at 24.347 kb on + strand at 24.347 kb on + strand at 24.347 kb on + strand at 24.348 kb on - strand at 24.348 kb on - strand at 24.348 kb on - strand at 24.366 kb on + strand at 24.366 kb on + strand at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.484 kb on - strand, within GFF7107 at 24.484 kb on - strand, within GFF7107 at 24.585 kb on + strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.609 kb on + strand, within GFF7107 at 24.610 kb on - strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.640 kb on - strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.667 kb on - strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.821 kb on - strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.844 kb on - strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.903 kb on - strand, within GFF7107 at 24.940 kb on - strand, within GFF7107 at 24.940 kb on - strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.183 kb on - strand, within GFF7107 at 25.183 kb on - strand, within GFF7107
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 22,334 - GFF7104 0.37 +1.8 22,439 + GFF7104 0.53 -0.4 22,440 - GFF7104 0.53 -0.3 22,481 + GFF7104 0.60 -0.3 22,481 + GFF7104 0.60 -0.1 22,481 + GFF7104 0.60 +0.1 22,481 + GFF7104 0.60 +0.3 22,481 + GFF7104 0.60 -0.8 22,481 + GFF7104 0.60 +0.1 22,482 - GFF7104 0.60 -0.2 22,482 - GFF7104 0.60 +0.6 22,482 - GFF7104 0.60 -0.2 22,482 - GFF7104 0.60 -0.1 22,482 - GFF7104 0.60 -1.3 22,482 - GFF7104 0.60 -0.3 22,482 - GFF7104 0.60 +0.6 22,607 + GFF7104 0.79 -0.1 22,607 + GFF7104 0.79 -0.3 22,607 + GFF7104 0.79 +0.0 22,607 + GFF7104 0.79 +0.3 22,607 + GFF7104 0.79 -0.1 22,607 + GFF7104 0.79 -0.6 22,608 - GFF7104 0.79 -1.5 22,608 - GFF7104 0.79 -0.3 22,608 - GFF7104 0.79 -0.8 22,608 - GFF7104 0.79 +0.3 22,637 + GFF7104 0.84 -1.0 22,637 + GFF7104 0.84 +0.2 22,637 + GFF7104 0.84 +1.0 22,637 + GFF7104 0.84 -0.1 22,638 - GFF7104 0.84 -0.6 22,638 - GFF7104 0.84 +0.2 22,703 + -0.4 22,703 + +0.8 22,703 + +2.6 22,703 + -0.5 22,703 + -1.6 22,704 - +0.8 22,704 - +0.1 22,704 - +0.5 22,704 - -0.9 22,704 - -0.4 22,704 - +0.6 22,705 + -0.4 22,705 + -0.8 22,705 + -0.4 22,705 + -0.7 22,705 + +0.3 22,705 + -2.8 22,705 + -0.9 22,705 + +0.5 22,705 + +1.6 22,705 + +0.6 22,705 + -0.8 22,705 + +0.0 22,705 + +0.1 22,705 + -0.8 22,705 + -0.4 22,705 + -1.0 22,705 + +1.1 22,705 + -2.3 22,705 + +0.1 22,705 + -0.5 22,705 + -0.8 22,705 + -0.2 22,705 + -0.9 22,705 + +0.2 22,705 + -0.5 22,705 + -0.2 22,705 + +0.0 22,706 - -0.1 22,706 - -0.7 22,706 - -0.6 22,706 - -0.6 22,706 - -0.4 22,706 - -0.4 22,706 - +0.2 22,706 - -0.6 22,706 - +0.2 22,706 - -0.6 22,706 - +1.2 22,706 - -0.2 22,706 - -2.3 22,706 - -0.5 22,706 - +0.3 22,706 - -0.3 22,706 - +0.2 22,706 - -0.2 22,706 - +0.3 22,706 - +0.4 22,707 - +0.1 22,766 + +0.9 22,780 + +0.5 22,780 + +0.3 22,780 + -0.6 22,780 + -0.3 22,780 + -1.9 22,780 + +1.5 22,780 + -1.5 22,780 + +0.3 22,780 + +0.2 22,780 + +0.2 22,780 + +0.8 22,780 + +0.0 22,781 - -0.5 22,781 - -1.5 22,781 - +0.5 22,781 - -0.9 22,781 - -0.6 22,781 - -0.6 22,781 - -0.5 22,781 - -0.6 22,781 - -0.4 22,781 - -0.6 22,781 - -1.0 22,781 - -0.0 22,828 + GFF7105 0.20 +0.1 22,828 + GFF7105 0.20 -0.3 23,171 + -0.2 23,171 + -0.2 23,174 + -0.3 23,228 + +0.2 23,229 - -0.4 23,283 - -0.4 23,283 - -0.3 23,283 - -0.1 23,317 + +0.0 23,317 + -1.7 23,317 + -0.1 23,317 + -0.2 23,317 + +0.2 23,317 + -0.5 23,318 - -1.5 23,318 - -0.5 23,318 - -0.1 23,318 - -0.2 23,318 - +0.4 23,318 - -0.5 23,318 - -0.3 23,318 - -0.2 23,400 + GFF7106 0.15 -0.2 23,400 + GFF7106 0.15 -0.4 23,400 + GFF7106 0.15 -0.6 23,400 + GFF7106 0.15 -0.4 23,400 + GFF7106 0.15 +0.2 23,401 - GFF7106 0.15 -1.3 23,401 - GFF7106 0.15 -0.8 23,401 - GFF7106 0.15 +1.3 23,422 + GFF7106 0.17 -0.8 23,423 - GFF7106 0.17 +0.2 23,770 + GFF7106 0.53 +0.2 23,770 + GFF7106 0.53 -0.4 23,770 + GFF7106 0.53 +0.7 23,770 + GFF7106 0.53 +0.9 23,771 - GFF7106 0.53 -0.2 23,771 - GFF7106 0.53 +0.6 23,771 - GFF7106 0.53 -0.6 23,771 - GFF7106 0.53 -0.3 23,771 - GFF7106 0.53 -0.4 23,909 - GFF7106 0.67 -1.3 23,923 + GFF7106 0.68 -1.0 24,209 - +0.2 24,260 - -0.2 24,347 + -0.5 24,347 + +0.0 24,347 + -0.9 24,348 - -0.8 24,348 - -0.8 24,348 - +2.6 24,366 + -0.5 24,366 + +0.2 24,483 + GFF7107 0.15 +1.1 24,483 + GFF7107 0.15 -0.0 24,483 + GFF7107 0.15 -2.2 24,483 + GFF7107 0.15 -0.4 24,483 + GFF7107 0.15 -0.4 24,484 - GFF7107 0.15 -1.6 24,484 - GFF7107 0.15 -0.4 24,585 + GFF7107 0.21 -0.0 24,586 - GFF7107 0.21 +0.2 24,586 - GFF7107 0.21 +0.4 24,586 - GFF7107 0.21 +0.1 24,586 - GFF7107 0.21 -0.0 24,586 - GFF7107 0.21 +0.1 24,586 - GFF7107 0.21 +1.6 24,609 + GFF7107 0.23 -0.2 24,610 - GFF7107 0.23 +1.5 24,633 + GFF7107 0.24 -1.1 24,633 + GFF7107 0.24 +0.9 24,633 + GFF7107 0.24 -1.0 24,634 - GFF7107 0.24 -1.9 24,634 - GFF7107 0.24 -0.4 24,634 - GFF7107 0.24 -0.0 24,634 - GFF7107 0.24 +0.3 24,634 - GFF7107 0.24 -0.8 24,636 + GFF7107 0.24 -0.8 24,636 + GFF7107 0.24 -0.7 24,636 + GFF7107 0.24 -0.6 24,636 + GFF7107 0.24 -0.6 24,636 + GFF7107 0.24 +0.0 24,636 + GFF7107 0.24 -0.6 24,636 + GFF7107 0.24 -0.2 24,636 + GFF7107 0.24 -0.2 24,636 + GFF7107 0.24 -0.1 24,636 + GFF7107 0.24 -0.2 24,637 - GFF7107 0.24 +0.4 24,637 - GFF7107 0.24 -0.5 24,637 - GFF7107 0.24 +1.2 24,637 - GFF7107 0.24 -0.6 24,637 - GFF7107 0.24 -0.8 24,640 - GFF7107 0.25 -0.5 24,666 + GFF7107 0.26 +0.2 24,666 + GFF7107 0.26 -0.8 24,666 + GFF7107 0.26 +0.1 24,667 - GFF7107 0.26 -0.5 24,687 + GFF7107 0.27 -1.1 24,687 + GFF7107 0.27 +0.5 24,687 + GFF7107 0.27 -0.2 24,688 - GFF7107 0.27 -0.2 24,688 - GFF7107 0.27 +1.2 24,688 - GFF7107 0.27 +1.8 24,821 - GFF7107 0.35 -0.5 24,823 + GFF7107 0.35 -0.2 24,823 + GFF7107 0.35 -0.5 24,823 + GFF7107 0.35 -0.2 24,823 + GFF7107 0.35 +0.6 24,824 - GFF7107 0.36 -0.2 24,824 - GFF7107 0.36 -0.2 24,824 - GFF7107 0.36 -1.0 24,843 + GFF7107 0.37 +0.7 24,843 + GFF7107 0.37 -0.1 24,843 + GFF7107 0.37 -1.2 24,843 + GFF7107 0.37 -0.6 24,844 - GFF7107 0.37 -1.5 24,902 + GFF7107 0.40 -0.2 24,902 + GFF7107 0.40 -0.8 24,902 + GFF7107 0.40 -1.9 24,903 - GFF7107 0.40 -0.7 24,940 - GFF7107 0.42 +0.8 24,940 - GFF7107 0.42 -1.2 25,143 + GFF7107 0.55 -0.1 25,143 + GFF7107 0.55 -0.9 25,143 + GFF7107 0.55 +0.8 25,143 + GFF7107 0.55 +0.1 25,143 + GFF7107 0.55 -0.1 25,143 + GFF7107 0.55 -0.8 25,144 - GFF7107 0.55 -0.2 25,144 - GFF7107 0.55 -0.6 25,144 - GFF7107 0.55 +0.2 25,144 - GFF7107 0.55 +0.2 25,144 - GFF7107 0.55 -0.4 25,182 + GFF7107 0.57 +0.7 25,182 + GFF7107 0.57 +0.4 25,182 + GFF7107 0.57 +0.2 25,182 + GFF7107 0.57 -0.1 25,182 + GFF7107 0.57 +0.4 25,183 - GFF7107 0.57 +1.8 25,183 - GFF7107 0.57 +0.2
Or see this region's nucleotide sequence