Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7099 and GFF7100 are separated by 1 nucleotides GFF7100 and GFF7101 are separated by 2 nucleotides GFF7101 and GFF7102 are separated by 33 nucleotides
GFF7099 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10), at 18,270 to 18,701
GFF7099
GFF7100 - similar to protocatechuate 4,5-dioxygenase beta chain, at 18,703 to 19,521
GFF7100
GFF7101 - hypothetical protein, at 19,524 to 19,850
GFF7101
GFF7102 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 19,884 to 21,350
GFF7102
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.557 kb on - strand, within GFF7099 at 18.557 kb on - strand, within GFF7099 at 18.679 kb on + strand at 18.679 kb on + strand at 18.866 kb on + strand, within GFF7100 at 18.866 kb on + strand, within GFF7100 at 18.867 kb on - strand, within GFF7100 at 19.212 kb on + strand, within GFF7100 at 19.295 kb on + strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.430 kb on + strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.525 kb on + strand at 19.526 kb on - strand at 19.526 kb on - strand at 19.591 kb on + strand, within GFF7101 at 19.592 kb on - strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.665 kb on + strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.717 kb on + strand, within GFF7101 at 19.730 kb on - strand, within GFF7101 at 19.751 kb on - strand, within GFF7101 at 19.835 kb on + strand at 19.836 kb on - strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 20.113 kb on + strand, within GFF7102 at 20.113 kb on + strand, within GFF7102 at 20.129 kb on - strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.476 kb on + strand, within GFF7102 at 20.654 kb on + strand, within GFF7102
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,557 - GFF7099 0.66 -0.4 18,557 - GFF7099 0.66 -1.8 18,679 + -1.1 18,679 + -0.2 18,866 + GFF7100 0.20 +0.1 18,866 + GFF7100 0.20 -0.4 18,867 - GFF7100 0.20 +2.4 19,212 + GFF7100 0.62 -0.4 19,295 + GFF7100 0.72 +0.6 19,296 - GFF7100 0.72 -0.2 19,296 - GFF7100 0.72 -0.2 19,430 + GFF7100 0.89 +0.3 19,431 - GFF7100 0.89 -1.3 19,431 - GFF7100 0.89 -0.5 19,431 - GFF7100 0.89 +0.0 19,525 + -0.4 19,526 - -0.4 19,526 - -0.1 19,591 + GFF7101 0.20 -2.1 19,592 - GFF7101 0.21 -0.8 19,624 + GFF7101 0.31 +1.2 19,624 + GFF7101 0.31 +0.4 19,624 + GFF7101 0.31 -0.5 19,625 - GFF7101 0.31 -0.3 19,625 - GFF7101 0.31 -0.3 19,625 - GFF7101 0.31 +0.2 19,625 - GFF7101 0.31 -1.1 19,665 + GFF7101 0.43 -0.4 19,666 - GFF7101 0.43 -0.1 19,666 - GFF7101 0.43 -0.2 19,666 - GFF7101 0.43 -0.5 19,693 + GFF7101 0.52 -0.4 19,693 + GFF7101 0.52 -1.1 19,694 - GFF7101 0.52 -0.5 19,694 - GFF7101 0.52 +0.7 19,694 - GFF7101 0.52 +0.0 19,694 - GFF7101 0.52 -0.3 19,694 - GFF7101 0.52 -0.7 19,694 - GFF7101 0.52 -1.4 19,717 + GFF7101 0.59 -1.0 19,730 - GFF7101 0.63 -0.6 19,751 - GFF7101 0.69 +0.8 19,835 + -0.1 19,836 - +1.0 19,840 + -0.4 19,840 + +0.2 19,840 + -0.6 19,840 + -0.7 19,841 - -0.1 19,841 - -0.3 19,841 - +1.8 19,841 - +2.4 19,958 - -0.6 19,958 - -0.3 19,958 - -1.0 19,958 - +3.6 19,958 - -0.2 19,958 - -0.2 20,113 + GFF7102 0.16 -0.2 20,113 + GFF7102 0.16 -0.6 20,129 - GFF7102 0.17 +0.2 20,353 + GFF7102 0.32 -0.2 20,353 + GFF7102 0.32 +0.6 20,354 - GFF7102 0.32 -0.3 20,354 - GFF7102 0.32 -0.6 20,354 - GFF7102 0.32 +0.5 20,354 - GFF7102 0.32 -0.9 20,476 + GFF7102 0.40 -1.1 20,654 + GFF7102 0.52 -0.1
Or see this region's nucleotide sequence