Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF709 and GFF710 are separated by 90 nucleotides GFF710 and GFF711 overlap by 4 nucleotides GFF711 and GFF712 overlap by 4 nucleotides
GFF709 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 767,286 to 768,446
GFF709
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
GFF711 - KEGG: ribose transport system permease protein, at 769,478 to 770,443
GFF711
GFF712 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 770,440 to 771,990
GFF712
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2 at 767.548 kb on + strand, within GFF709 at 767.548 kb on + strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.678 kb on - strand, within GFF709 at 767.740 kb on + strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.212 kb on - strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.526 kb on + strand at 768.527 kb on - strand at 768.527 kb on - strand at 768.655 kb on + strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.755 kb on - strand, within GFF710 at 769.039 kb on + strand, within GFF710 at 769.060 kb on + strand, within GFF710 at 769.061 kb on - strand, within GFF710 at 769.463 kb on + strand at 769.464 kb on - strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.755 kb on + strand, within GFF711 at 769.755 kb on + strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.968 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.984 kb on - strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.371 kb on - strand at 770.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 767,548 + GFF709 0.23 +0.7 767,548 + GFF709 0.23 -0.7 767,549 - GFF709 0.23 -0.1 767,549 - GFF709 0.23 -0.9 767,549 - GFF709 0.23 +0.1 767,549 - GFF709 0.23 -0.5 767,582 - GFF709 0.25 +0.8 767,582 - GFF709 0.25 -1.0 767,677 + GFF709 0.34 -0.3 767,677 + GFF709 0.34 -0.4 767,678 - GFF709 0.34 +0.6 767,740 + GFF709 0.39 +0.0 767,888 - GFF709 0.52 +1.5 767,888 - GFF709 0.52 +0.4 768,101 - GFF709 0.70 +0.8 768,101 - GFF709 0.70 -0.1 768,211 + GFF709 0.80 -0.5 768,211 + GFF709 0.80 -0.0 768,211 + GFF709 0.80 -2.3 768,212 - GFF709 0.80 +0.8 768,229 + GFF709 0.81 -0.2 768,229 + GFF709 0.81 +1.0 768,229 + GFF709 0.81 +0.4 768,229 + GFF709 0.81 +1.2 768,230 - GFF709 0.81 +0.3 768,230 - GFF709 0.81 +0.1 768,230 - GFF709 0.81 -0.2 768,526 + +0.2 768,527 - -1.7 768,527 - -0.2 768,655 + GFF710 0.12 +0.4 768,656 - GFF710 0.13 +1.1 768,656 - GFF710 0.13 +0.6 768,754 + GFF710 0.23 +1.3 768,754 + GFF710 0.23 -0.1 768,755 - GFF710 0.23 -0.8 769,039 + GFF710 0.53 -0.1 769,060 + GFF710 0.55 +0.3 769,061 - GFF710 0.55 -1.0 769,463 + +0.8 769,464 - +0.8 769,509 + -0.4 769,509 + +0.1 769,509 + -0.2 769,509 + +0.1 769,509 + -0.1 769,510 - -1.0 769,510 - +0.2 769,510 - +0.0 769,510 - +0.1 769,510 - +0.2 769,510 - +1.5 769,755 + GFF711 0.29 +0.5 769,755 + GFF711 0.29 -0.3 769,756 - GFF711 0.29 +0.9 769,756 - GFF711 0.29 -0.3 769,968 + GFF711 0.51 +0.6 769,983 + GFF711 0.52 +0.1 769,983 + GFF711 0.52 -0.1 769,983 + GFF711 0.52 -0.4 769,984 - GFF711 0.52 +0.1 770,187 + GFF711 0.73 -0.2 770,187 + GFF711 0.73 +1.8 770,188 - GFF711 0.73 +0.7 770,188 - GFF711 0.73 +1.2 770,188 - GFF711 0.73 -0.3 770,370 + +0.5 770,370 + -0.0 770,370 + -0.2 770,370 + -0.4 770,371 - +0.9 770,371 - -1.0
Or see this region's nucleotide sequence