Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF708 and GFF709 overlap by 1 nucleotides GFF709 and GFF710 are separated by 90 nucleotides
GFF708 - Oxidoreductase, GMC family, at 765,571 to 767,286
GFF708
GFF709 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 767,286 to 768,446
GFF709
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
Position (kb) 767
768
769 Strain fitness (log2 ratio) -2
-1
0
1
2 at 766.298 kb on + strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.298 kb on + strand, within GFF708 at 766.299 kb on - strand, within GFF708 at 766.299 kb on - strand, within GFF708 at 766.361 kb on + strand, within GFF708 at 766.362 kb on - strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.594 kb on + strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.595 kb on - strand, within GFF708 at 766.652 kb on + strand, within GFF708 at 766.745 kb on + strand, within GFF708 at 766.896 kb on - strand, within GFF708 at 766.896 kb on - strand, within GFF708 at 766.896 kb on - strand, within GFF708 at 766.953 kb on - strand, within GFF708 at 767.114 kb on + strand, within GFF708 at 767.115 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.268 kb on - strand at 767.287 kb on + strand at 767.347 kb on + strand at 767.348 kb on - strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.377 kb on + strand at 767.378 kb on - strand at 767.491 kb on + strand, within GFF709 at 767.492 kb on - strand, within GFF709 at 767.548 kb on + strand, within GFF709 at 767.548 kb on + strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.678 kb on - strand, within GFF709 at 767.740 kb on + strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.212 kb on - strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.526 kb on + strand at 768.527 kb on - strand at 768.527 kb on - strand at 768.655 kb on + strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.755 kb on - strand, within GFF710 at 769.039 kb on + strand, within GFF710 at 769.060 kb on + strand, within GFF710 at 769.061 kb on - strand, within GFF710
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 766,298 + GFF708 0.42 +0.3 766,298 + GFF708 0.42 -0.3 766,298 + GFF708 0.42 +1.0 766,299 - GFF708 0.42 +0.1 766,299 - GFF708 0.42 +0.6 766,361 + GFF708 0.46 +0.0 766,362 - GFF708 0.46 +1.8 766,594 + GFF708 0.60 +0.1 766,594 + GFF708 0.60 -0.6 766,594 + GFF708 0.60 -0.5 766,594 + GFF708 0.60 +0.0 766,594 + GFF708 0.60 +0.6 766,595 - GFF708 0.60 +0.0 766,595 - GFF708 0.60 +0.1 766,595 - GFF708 0.60 +0.3 766,595 - GFF708 0.60 +0.1 766,595 - GFF708 0.60 +0.8 766,595 - GFF708 0.60 -1.2 766,595 - GFF708 0.60 -1.0 766,595 - GFF708 0.60 +0.5 766,595 - GFF708 0.60 +0.4 766,652 + GFF708 0.63 -1.7 766,745 + GFF708 0.68 +1.8 766,896 - GFF708 0.77 -0.2 766,896 - GFF708 0.77 +0.1 766,896 - GFF708 0.77 +0.0 766,953 - GFF708 0.81 +0.1 767,114 + GFF708 0.90 +0.8 767,115 - -0.6 767,268 - +0.3 767,268 - +0.6 767,268 - -1.0 767,287 + -0.1 767,347 + +0.2 767,348 - +0.6 767,377 + -0.6 767,377 + -0.1 767,377 + -0.0 767,377 + -0.4 767,377 + +1.6 767,378 - -0.5 767,491 + GFF709 0.18 -0.2 767,492 - GFF709 0.18 +0.2 767,548 + GFF709 0.23 +0.7 767,548 + GFF709 0.23 -0.7 767,549 - GFF709 0.23 -0.1 767,549 - GFF709 0.23 -0.9 767,549 - GFF709 0.23 +0.1 767,549 - GFF709 0.23 -0.5 767,582 - GFF709 0.25 +0.8 767,582 - GFF709 0.25 -1.0 767,677 + GFF709 0.34 -0.3 767,677 + GFF709 0.34 -0.4 767,678 - GFF709 0.34 +0.6 767,740 + GFF709 0.39 +0.0 767,888 - GFF709 0.52 +1.5 767,888 - GFF709 0.52 +0.4 768,101 - GFF709 0.70 +0.8 768,101 - GFF709 0.70 -0.1 768,211 + GFF709 0.80 -0.5 768,211 + GFF709 0.80 -0.0 768,211 + GFF709 0.80 -2.3 768,212 - GFF709 0.80 +0.8 768,229 + GFF709 0.81 -0.2 768,229 + GFF709 0.81 +1.0 768,229 + GFF709 0.81 +0.4 768,229 + GFF709 0.81 +1.2 768,230 - GFF709 0.81 +0.3 768,230 - GFF709 0.81 +0.1 768,230 - GFF709 0.81 -0.2 768,526 + +0.2 768,527 - -1.7 768,527 - -0.2 768,655 + GFF710 0.12 +0.4 768,656 - GFF710 0.13 +1.1 768,656 - GFF710 0.13 +0.6 768,754 + GFF710 0.23 +1.3 768,754 + GFF710 0.23 -0.1 768,755 - GFF710 0.23 -0.8 769,039 + GFF710 0.53 -0.1 769,060 + GFF710 0.55 +0.3 769,061 - GFF710 0.55 -1.0
Or see this region's nucleotide sequence