Strain Fitness in Variovorax sp. SCN45 around GFF7044

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7042 and GFF7043 are separated by 9 nucleotidesGFF7043 and GFF7044 are separated by 79 nucleotidesGFF7044 and GFF7045 are separated by 22 nucleotidesGFF7045 and GFF7046 are separated by 29 nucleotides GFF7042 - Acetyltransferase, GNAT family, at 4,746 to 5,264 GFF7042 GFF7043 - Putative transmembrane protein, at 5,274 to 5,957 GFF7043 GFF7044 - Inner membrane protein YedI, at 6,037 to 6,945 GFF7044 GFF7045 - hypothetical protein, at 6,968 to 7,180 GFF7045 GFF7046 - FIG00854755: hypothetical protein, at 7,210 to 8,406 GFF7046 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.572 kb on - strand, within GFF7043at 5.701 kb on - strand, within GFF7043at 5.817 kb on - strand, within GFF7043at 5.817 kb on - strand, within GFF7043at 6.595 kb on + strand, within GFF7044at 6.596 kb on - strand, within GFF7044at 6.640 kb on + strand, within GFF7044at 6.640 kb on + strand, within GFF7044at 6.641 kb on - strand, within GFF7044at 6.970 kb on - strandat 6.970 kb on - strandat 7.048 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.050 kb on + strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.051 kb on - strand, within GFF7045at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.337 kb on + strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.338 kb on - strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.343 kb on + strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.344 kb on - strand, within GFF7046at 7.460 kb on + strand, within GFF7046at 7.460 kb on + strand, within GFF7046at 7.461 kb on - strand, within GFF7046at 7.466 kb on + strand, within GFF7046at 7.466 kb on + strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.467 kb on - strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.700 kb on + strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.701 kb on - strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.736 kb on + strand, within GFF7046at 7.737 kb on - strand, within GFF7046

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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5,572 - GFF7043 0.44 -0.1
5,701 - GFF7043 0.62 +1.2
5,817 - GFF7043 0.79 -0.1
5,817 - GFF7043 0.79 +0.5
6,595 + GFF7044 0.61 -1.4
6,596 - GFF7044 0.61 -1.4
6,640 + GFF7044 0.66 -0.9
6,640 + GFF7044 0.66 -0.1
6,641 - GFF7044 0.66 -0.5
6,970 - +0.2
6,970 - -0.4
7,048 + GFF7045 0.38 -0.2
7,050 + GFF7045 0.38 -1.5
7,050 + GFF7045 0.38 -0.4
7,050 + GFF7045 0.38 -0.4
7,050 + GFF7045 0.38 +0.3
7,050 + GFF7045 0.38 -0.4
7,050 + GFF7045 0.38 -0.7
7,051 - GFF7045 0.39 -2.1
7,051 - GFF7045 0.39 +0.4
7,051 - GFF7045 0.39 -0.5
7,051 - GFF7045 0.39 +0.1
7,051 - GFF7045 0.39 -0.1
7,051 - GFF7045 0.39 -0.4
7,337 + GFF7046 0.11 -0.3
7,337 + GFF7046 0.11 -2.1
7,337 + GFF7046 0.11 -0.3
7,337 + GFF7046 0.11 +0.4
7,337 + GFF7046 0.11 -0.6
7,337 + GFF7046 0.11 +0.2
7,337 + GFF7046 0.11 -0.6
7,337 + GFF7046 0.11 +0.8
7,337 + GFF7046 0.11 +1.6
7,338 - GFF7046 0.11 +0.4
7,338 - GFF7046 0.11 -0.4
7,338 - GFF7046 0.11 -0.7
7,338 - GFF7046 0.11 +0.9
7,338 - GFF7046 0.11 +0.1
7,338 - GFF7046 0.11 -0.3
7,338 - GFF7046 0.11 -0.6
7,338 - GFF7046 0.11 -0.1
7,338 - GFF7046 0.11 -0.7
7,338 - GFF7046 0.11 +2.6
7,338 - GFF7046 0.11 +0.4
7,343 + GFF7046 0.11 +0.6
7,343 + GFF7046 0.11 +0.3
7,343 + GFF7046 0.11 -1.9
7,343 + GFF7046 0.11 -0.3
7,343 + GFF7046 0.11 -1.3
7,343 + GFF7046 0.11 -0.6
7,343 + GFF7046 0.11 +0.9
7,343 + GFF7046 0.11 +0.3
7,343 + GFF7046 0.11 +0.4
7,343 + GFF7046 0.11 +0.5
7,343 + GFF7046 0.11 -0.1
7,344 - GFF7046 0.11 +0.8
7,344 - GFF7046 0.11 -0.3
7,344 - GFF7046 0.11 -0.1
7,460 + GFF7046 0.21 -0.8
7,460 + GFF7046 0.21 -0.1
7,461 - GFF7046 0.21 -0.3
7,466 + GFF7046 0.21 -0.1
7,466 + GFF7046 0.21 -0.5
7,467 - GFF7046 0.21 +0.9
7,467 - GFF7046 0.21 -0.1
7,467 - GFF7046 0.21 -1.2
7,700 + GFF7046 0.41 -0.5
7,700 + GFF7046 0.41 -2.4
7,700 + GFF7046 0.41 +0.7
7,700 + GFF7046 0.41 -1.3
7,700 + GFF7046 0.41 -2.7
7,700 + GFF7046 0.41 +1.6
7,701 - GFF7046 0.41 -0.2
7,701 - GFF7046 0.41 +0.5
7,701 - GFF7046 0.41 -0.8
7,701 - GFF7046 0.41 -1.9
7,701 - GFF7046 0.41 -0.9
7,736 + GFF7046 0.44 -0.3
7,736 + GFF7046 0.44 -0.8
7,736 + GFF7046 0.44 -0.7
7,736 + GFF7046 0.44 +0.4
7,737 - GFF7046 0.44 -0.4

Or see this region's nucleotide sequence