Strain Fitness in Variovorax sp. SCN45 around GFF701

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF700 and GFF701 are separated by 4 nucleotidesGFF701 and GFF702 are separated by 83 nucleotides GFF700 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 755,041 to 756,987 GFF700 GFF701 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 756,992 to 757,867 GFF701 GFF702 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 757,951 to 759,180 GFF702 Position (kb) 756 757 758Strain fitness (log2 ratio) -2 -1 0 1 2at 756.132 kb on - strand, within GFF700at 756.132 kb on - strand, within GFF700at 756.132 kb on - strand, within GFF700at 756.132 kb on - strand, within GFF700at 756.154 kb on + strand, within GFF700at 756.155 kb on - strand, within GFF700at 756.155 kb on - strand, within GFF700at 756.155 kb on - strand, within GFF700at 756.155 kb on - strand, within GFF700at 756.266 kb on + strand, within GFF700at 756.267 kb on - strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.284 kb on + strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.285 kb on - strand, within GFF700at 756.296 kb on + strand, within GFF700at 756.297 kb on - strand, within GFF700at 756.302 kb on + strand, within GFF700at 756.302 kb on + strand, within GFF700at 756.302 kb on + strand, within GFF700at 756.302 kb on + strand, within GFF700at 756.303 kb on - strand, within GFF700at 756.303 kb on - strand, within GFF700at 756.303 kb on - strand, within GFF700at 756.350 kb on + strand, within GFF700at 756.350 kb on + strand, within GFF700at 756.350 kb on + strand, within GFF700at 756.351 kb on - strand, within GFF700at 756.351 kb on - strand, within GFF700at 756.351 kb on - strand, within GFF700at 756.360 kb on - strand, within GFF700at 756.365 kb on + strand, within GFF700at 756.366 kb on - strand, within GFF700at 756.497 kb on + strand, within GFF700at 756.497 kb on + strand, within GFF700at 756.497 kb on + strand, within GFF700at 756.497 kb on + strand, within GFF700at 756.498 kb on - strand, within GFF700at 756.498 kb on - strand, within GFF700at 756.500 kb on + strand, within GFF700at 756.500 kb on + strand, within GFF700at 756.500 kb on + strand, within GFF700at 756.500 kb on + strand, within GFF700at 756.501 kb on - strand, within GFF700at 756.501 kb on - strand, within GFF700at 756.764 kb on + strand, within GFF700at 756.816 kb on - strandat 756.816 kb on - strandat 756.816 kb on - strandat 756.854 kb on + strandat 756.854 kb on + strandat 756.854 kb on + strandat 756.855 kb on - strandat 756.855 kb on - strandat 756.884 kb on + strandat 756.884 kb on + strandat 756.884 kb on + strandat 756.884 kb on + strandat 756.884 kb on + strandat 756.884 kb on + strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.885 kb on - strandat 756.887 kb on + strandat 756.888 kb on - strandat 756.888 kb on - strandat 757.084 kb on - strand, within GFF701at 757.098 kb on + strand, within GFF701at 757.098 kb on + strand, within GFF701at 757.099 kb on - strand, within GFF701at 757.378 kb on - strand, within GFF701at 757.378 kb on - strand, within GFF701at 757.689 kb on + strand, within GFF701at 757.689 kb on + strand, within GFF701at 757.690 kb on - strand, within GFF701at 757.690 kb on - strand, within GFF701at 757.794 kb on + strandat 757.794 kb on + strandat 757.815 kb on + strandat 757.816 kb on - strandat 757.816 kb on - strandat 757.816 kb on - strandat 757.952 kb on + strandat 757.952 kb on + strandat 757.952 kb on + strandat 757.952 kb on + strandat 757.953 kb on - strandat 757.953 kb on - strandat 757.953 kb on - strandat 757.953 kb on - strandat 758.120 kb on + strand, within GFF702at 758.120 kb on + strand, within GFF702at 758.120 kb on + strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.226 kb on - strand, within GFF702at 758.226 kb on - strand, within GFF702at 758.226 kb on - strand, within GFF702at 758.237 kb on + strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.499 kb on - strand, within GFF702at 758.499 kb on - strand, within GFF702at 758.648 kb on + strand, within GFF702at 758.649 kb on - strand, within GFF702at 758.649 kb on - strand, within GFF702at 758.759 kb on + strand, within GFF702

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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756,132 - GFF700 0.56 -0.3
756,132 - GFF700 0.56 +0.4
756,132 - GFF700 0.56 -1.8
756,132 - GFF700 0.56 -0.0
756,154 + GFF700 0.57 +0.6
756,155 - GFF700 0.57 +0.8
756,155 - GFF700 0.57 -0.3
756,155 - GFF700 0.57 +2.2
756,155 - GFF700 0.57 +0.4
756,266 + GFF700 0.63 -0.1
756,267 - GFF700 0.63 -0.0
756,284 + GFF700 0.64 -0.8
756,284 + GFF700 0.64 -0.9
756,284 + GFF700 0.64 +0.6
756,284 + GFF700 0.64 -0.4
756,284 + GFF700 0.64 +0.1
756,284 + GFF700 0.64 +0.4
756,284 + GFF700 0.64 -0.5
756,284 + GFF700 0.64 +0.4
756,284 + GFF700 0.64 -0.2
756,284 + GFF700 0.64 +1.4
756,284 + GFF700 0.64 +1.0
756,284 + GFF700 0.64 -0.3
756,285 - GFF700 0.64 +1.1
756,285 - GFF700 0.64 -0.1
756,285 - GFF700 0.64 +0.4
756,285 - GFF700 0.64 +0.4
756,285 - GFF700 0.64 -0.4
756,285 - GFF700 0.64 +0.8
756,285 - GFF700 0.64 -0.3
756,285 - GFF700 0.64 +0.3
756,285 - GFF700 0.64 -1.0
756,285 - GFF700 0.64 -1.5
756,285 - GFF700 0.64 -0.2
756,285 - GFF700 0.64 -0.7
756,285 - GFF700 0.64 -0.2
756,296 + GFF700 0.64 +0.2
756,297 - GFF700 0.65 +1.8
756,302 + GFF700 0.65 -0.3
756,302 + GFF700 0.65 -0.1
756,302 + GFF700 0.65 +0.6
756,302 + GFF700 0.65 +0.2
756,303 - GFF700 0.65 +0.2
756,303 - GFF700 0.65 +0.1
756,303 - GFF700 0.65 +0.7
756,350 + GFF700 0.67 +1.0
756,350 + GFF700 0.67 -1.3
756,350 + GFF700 0.67 -0.3
756,351 - GFF700 0.67 -0.3
756,351 - GFF700 0.67 +0.3
756,351 - GFF700 0.67 +0.1
756,360 - GFF700 0.68 +0.3
756,365 + GFF700 0.68 -0.5
756,366 - GFF700 0.68 +0.2
756,497 + GFF700 0.75 +1.3
756,497 + GFF700 0.75 +0.3
756,497 + GFF700 0.75 -0.3
756,497 + GFF700 0.75 +1.8
756,498 - GFF700 0.75 +0.8
756,498 - GFF700 0.75 +0.1
756,500 + GFF700 0.75 +1.3
756,500 + GFF700 0.75 -0.4
756,500 + GFF700 0.75 -0.2
756,500 + GFF700 0.75 -0.2
756,501 - GFF700 0.75 -0.2
756,501 - GFF700 0.75 +0.2
756,764 + GFF700 0.88 -0.4
756,816 - +0.5
756,816 - +0.1
756,816 - -0.5
756,854 + -0.1
756,854 + +1.2
756,854 + -1.8
756,855 - -0.3
756,855 - +1.0
756,884 + -0.1
756,884 + +1.8
756,884 + -0.3
756,884 + -0.8
756,884 + +0.1
756,884 + +1.3
756,885 - +0.2
756,885 - -0.2
756,885 - +0.2
756,885 - -0.6
756,885 - -0.8
756,885 - -0.7
756,885 - +0.2
756,885 - +1.1
756,885 - -1.3
756,885 - +0.2
756,887 + -0.0
756,888 - -1.4
756,888 - +0.0
757,084 - GFF701 0.11 +0.6
757,098 + GFF701 0.12 +0.1
757,098 + GFF701 0.12 +0.3
757,099 - GFF701 0.12 -0.4
757,378 - GFF701 0.44 +0.3
757,378 - GFF701 0.44 +0.3
757,689 + GFF701 0.80 +1.0
757,689 + GFF701 0.80 +0.5
757,690 - GFF701 0.80 +0.3
757,690 - GFF701 0.80 -0.2
757,794 + -0.2
757,794 + -0.5
757,815 + +0.2
757,816 - -0.2
757,816 - -0.3
757,816 - -0.7
757,952 + +0.2
757,952 + -0.1
757,952 + -0.5
757,952 + +0.4
757,953 - -0.2
757,953 - -0.1
757,953 - +1.8
757,953 - -0.4
758,120 + GFF702 0.14 -0.2
758,120 + GFF702 0.14 -1.0
758,120 + GFF702 0.14 -0.5
758,121 - GFF702 0.14 +0.1
758,121 - GFF702 0.14 -0.1
758,121 - GFF702 0.14 -0.1
758,121 - GFF702 0.14 +0.6
758,121 - GFF702 0.14 +0.1
758,121 - GFF702 0.14 +0.6
758,225 + GFF702 0.22 -0.5
758,225 + GFF702 0.22 +0.2
758,225 + GFF702 0.22 -0.1
758,225 + GFF702 0.22 +0.2
758,225 + GFF702 0.22 +1.8
758,226 - GFF702 0.22 -0.3
758,226 - GFF702 0.22 -0.5
758,226 - GFF702 0.22 -0.6
758,237 + GFF702 0.23 -0.1
758,238 - GFF702 0.23 +0.3
758,238 - GFF702 0.23 -0.4
758,238 - GFF702 0.23 -0.5
758,238 - GFF702 0.23 -0.0
758,499 - GFF702 0.45 +0.9
758,499 - GFF702 0.45 -0.1
758,648 + GFF702 0.57 -0.5
758,649 - GFF702 0.57 +0.2
758,649 - GFF702 0.57 +0.4
758,759 + GFF702 0.66 +0.8

Or see this region's nucleotide sequence