Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF698 and GFF699 are separated by 77 nucleotides GFF699 and GFF700 are separated by 34 nucleotides GFF700 and GFF701 are separated by 4 nucleotides GFF701 and GFF702 are separated by 83 nucleotides
GFF698 - Transcriptional regulator, LysR family, at 753,322 to 754,206
GFF698
GFF699 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 754,284 to 755,006
GFF699
GFF700 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 755,041 to 756,987
GFF700
GFF701 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 756,992 to 757,867
GFF701
GFF702 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 757,951 to 759,180
GFF702
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2 at 754.271 kb on + strand at 754.285 kb on + strand at 754.285 kb on + strand at 754.285 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.303 kb on + strand at 754.304 kb on - strand at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.382 kb on - strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.795 kb on + strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.796 kb on - strand, within GFF699 at 754.975 kb on + strand at 755.060 kb on + strand at 755.060 kb on + strand at 755.060 kb on + strand at 755.060 kb on + strand at 755.061 kb on - strand at 755.061 kb on - strand at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.645 kb on + strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.646 kb on - strand, within GFF700 at 755.816 kb on + strand, within GFF700 at 755.816 kb on + strand, within GFF700 at 755.817 kb on - strand, within GFF700 at 755.817 kb on - strand, within GFF700 at 755.817 kb on - strand, within GFF700 at 755.936 kb on + strand, within GFF700 at 755.936 kb on + strand, within GFF700 at 755.936 kb on + strand, within GFF700 at 755.937 kb on - strand, within GFF700 at 755.937 kb on - strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.939 kb on + strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.940 kb on - strand, within GFF700 at 755.970 kb on + strand, within GFF700 at 756.132 kb on - strand, within GFF700 at 756.132 kb on - strand, within GFF700 at 756.132 kb on - strand, within GFF700 at 756.132 kb on - strand, within GFF700 at 756.154 kb on + strand, within GFF700 at 756.155 kb on - strand, within GFF700 at 756.155 kb on - strand, within GFF700 at 756.155 kb on - strand, within GFF700 at 756.155 kb on - strand, within GFF700 at 756.266 kb on + strand, within GFF700 at 756.267 kb on - strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.284 kb on + strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.285 kb on - strand, within GFF700 at 756.296 kb on + strand, within GFF700 at 756.297 kb on - strand, within GFF700 at 756.302 kb on + strand, within GFF700 at 756.302 kb on + strand, within GFF700 at 756.302 kb on + strand, within GFF700 at 756.302 kb on + strand, within GFF700 at 756.303 kb on - strand, within GFF700 at 756.303 kb on - strand, within GFF700 at 756.303 kb on - strand, within GFF700 at 756.350 kb on + strand, within GFF700 at 756.350 kb on + strand, within GFF700 at 756.350 kb on + strand, within GFF700 at 756.351 kb on - strand, within GFF700 at 756.351 kb on - strand, within GFF700 at 756.351 kb on - strand, within GFF700 at 756.360 kb on - strand, within GFF700 at 756.365 kb on + strand, within GFF700 at 756.366 kb on - strand, within GFF700 at 756.497 kb on + strand, within GFF700 at 756.497 kb on + strand, within GFF700 at 756.497 kb on + strand, within GFF700 at 756.497 kb on + strand, within GFF700 at 756.498 kb on - strand, within GFF700 at 756.498 kb on - strand, within GFF700 at 756.500 kb on + strand, within GFF700 at 756.500 kb on + strand, within GFF700 at 756.500 kb on + strand, within GFF700 at 756.500 kb on + strand, within GFF700 at 756.501 kb on - strand, within GFF700 at 756.501 kb on - strand, within GFF700 at 756.764 kb on + strand, within GFF700 at 756.816 kb on - strand at 756.816 kb on - strand at 756.816 kb on - strand at 756.854 kb on + strand at 756.854 kb on + strand at 756.854 kb on + strand at 756.855 kb on - strand at 756.855 kb on - strand at 756.884 kb on + strand at 756.884 kb on + strand at 756.884 kb on + strand at 756.884 kb on + strand at 756.884 kb on + strand at 756.884 kb on + strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.885 kb on - strand at 756.887 kb on + strand at 756.888 kb on - strand at 756.888 kb on - strand at 757.084 kb on - strand, within GFF701 at 757.098 kb on + strand, within GFF701 at 757.098 kb on + strand, within GFF701 at 757.099 kb on - strand, within GFF701 at 757.378 kb on - strand, within GFF701 at 757.378 kb on - strand, within GFF701 at 757.689 kb on + strand, within GFF701 at 757.689 kb on + strand, within GFF701 at 757.690 kb on - strand, within GFF701 at 757.690 kb on - strand, within GFF701 at 757.794 kb on + strand at 757.794 kb on + strand at 757.815 kb on + strand at 757.816 kb on - strand at 757.816 kb on - strand at 757.816 kb on - strand at 757.952 kb on + strand at 757.952 kb on + strand at 757.952 kb on + strand at 757.952 kb on + strand at 757.953 kb on - strand at 757.953 kb on - strand at 757.953 kb on - strand at 757.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 754,271 + -0.4 754,285 + -0.8 754,285 + -0.2 754,285 + +0.0 754,303 + +0.7 754,303 + -0.8 754,303 + +0.5 754,303 + -1.4 754,303 + +0.4 754,304 - +0.1 754,382 - GFF699 0.14 +0.3 754,382 - GFF699 0.14 -0.2 754,382 - GFF699 0.14 +1.8 754,382 - GFF699 0.14 -0.0 754,382 - GFF699 0.14 -1.0 754,795 + GFF699 0.71 -0.4 754,795 + GFF699 0.71 +0.3 754,795 + GFF699 0.71 +0.3 754,795 + GFF699 0.71 -1.0 754,796 - GFF699 0.71 -0.1 754,796 - GFF699 0.71 -0.7 754,796 - GFF699 0.71 -1.8 754,796 - GFF699 0.71 +1.2 754,975 + +0.5 755,060 + +0.6 755,060 + -0.1 755,060 + +0.1 755,060 + -0.5 755,061 - +1.0 755,061 - +0.1 755,645 + GFF700 0.31 -0.3 755,645 + GFF700 0.31 +0.5 755,645 + GFF700 0.31 -0.9 755,645 + GFF700 0.31 +0.8 755,645 + GFF700 0.31 +1.8 755,645 + GFF700 0.31 +0.1 755,645 + GFF700 0.31 +0.8 755,645 + GFF700 0.31 +0.2 755,646 - GFF700 0.31 +0.6 755,646 - GFF700 0.31 -1.7 755,646 - GFF700 0.31 -1.0 755,646 - GFF700 0.31 -0.0 755,646 - GFF700 0.31 -0.2 755,816 + GFF700 0.40 -0.1 755,816 + GFF700 0.40 +0.2 755,817 - GFF700 0.40 +0.0 755,817 - GFF700 0.40 -0.6 755,817 - GFF700 0.40 -0.1 755,936 + GFF700 0.46 -0.0 755,936 + GFF700 0.46 -0.0 755,936 + GFF700 0.46 -0.5 755,937 - GFF700 0.46 +0.4 755,937 - GFF700 0.46 -0.3 755,939 + GFF700 0.46 +0.2 755,939 + GFF700 0.46 +0.0 755,939 + GFF700 0.46 -0.9 755,939 + GFF700 0.46 -0.6 755,939 + GFF700 0.46 +0.7 755,939 + GFF700 0.46 +0.3 755,940 - GFF700 0.46 -0.3 755,940 - GFF700 0.46 +0.0 755,940 - GFF700 0.46 +0.9 755,940 - GFF700 0.46 +0.3 755,940 - GFF700 0.46 +0.1 755,940 - GFF700 0.46 +0.4 755,940 - GFF700 0.46 -0.8 755,940 - GFF700 0.46 +0.5 755,940 - GFF700 0.46 -0.1 755,940 - GFF700 0.46 +0.2 755,940 - GFF700 0.46 +0.2 755,940 - GFF700 0.46 -1.8 755,940 - GFF700 0.46 -0.1 755,940 - GFF700 0.46 +0.4 755,940 - GFF700 0.46 +0.2 755,970 + GFF700 0.48 -0.3 756,132 - GFF700 0.56 -0.3 756,132 - GFF700 0.56 +0.4 756,132 - GFF700 0.56 -1.8 756,132 - GFF700 0.56 -0.0 756,154 + GFF700 0.57 +0.6 756,155 - GFF700 0.57 +0.8 756,155 - GFF700 0.57 -0.3 756,155 - GFF700 0.57 +2.2 756,155 - GFF700 0.57 +0.4 756,266 + GFF700 0.63 -0.1 756,267 - GFF700 0.63 -0.0 756,284 + GFF700 0.64 -0.8 756,284 + GFF700 0.64 -0.9 756,284 + GFF700 0.64 +0.6 756,284 + GFF700 0.64 -0.4 756,284 + GFF700 0.64 +0.1 756,284 + GFF700 0.64 +0.4 756,284 + GFF700 0.64 -0.5 756,284 + GFF700 0.64 +0.4 756,284 + GFF700 0.64 -0.2 756,284 + GFF700 0.64 +1.4 756,284 + GFF700 0.64 +1.0 756,284 + GFF700 0.64 -0.3 756,285 - GFF700 0.64 +1.1 756,285 - GFF700 0.64 -0.1 756,285 - GFF700 0.64 +0.4 756,285 - GFF700 0.64 +0.4 756,285 - GFF700 0.64 -0.4 756,285 - GFF700 0.64 +0.8 756,285 - GFF700 0.64 -0.3 756,285 - GFF700 0.64 +0.3 756,285 - GFF700 0.64 -1.0 756,285 - GFF700 0.64 -1.5 756,285 - GFF700 0.64 -0.2 756,285 - GFF700 0.64 -0.7 756,285 - GFF700 0.64 -0.2 756,296 + GFF700 0.64 +0.2 756,297 - GFF700 0.65 +1.8 756,302 + GFF700 0.65 -0.3 756,302 + GFF700 0.65 -0.1 756,302 + GFF700 0.65 +0.6 756,302 + GFF700 0.65 +0.2 756,303 - GFF700 0.65 +0.2 756,303 - GFF700 0.65 +0.1 756,303 - GFF700 0.65 +0.7 756,350 + GFF700 0.67 +1.0 756,350 + GFF700 0.67 -1.3 756,350 + GFF700 0.67 -0.3 756,351 - GFF700 0.67 -0.3 756,351 - GFF700 0.67 +0.3 756,351 - GFF700 0.67 +0.1 756,360 - GFF700 0.68 +0.3 756,365 + GFF700 0.68 -0.5 756,366 - GFF700 0.68 +0.2 756,497 + GFF700 0.75 +1.3 756,497 + GFF700 0.75 +0.3 756,497 + GFF700 0.75 -0.3 756,497 + GFF700 0.75 +1.8 756,498 - GFF700 0.75 +0.8 756,498 - GFF700 0.75 +0.1 756,500 + GFF700 0.75 +1.3 756,500 + GFF700 0.75 -0.4 756,500 + GFF700 0.75 -0.2 756,500 + GFF700 0.75 -0.2 756,501 - GFF700 0.75 -0.2 756,501 - GFF700 0.75 +0.2 756,764 + GFF700 0.88 -0.4 756,816 - +0.5 756,816 - +0.1 756,816 - -0.5 756,854 + -0.1 756,854 + +1.2 756,854 + -1.8 756,855 - -0.3 756,855 - +1.0 756,884 + -0.1 756,884 + +1.8 756,884 + -0.3 756,884 + -0.8 756,884 + +0.1 756,884 + +1.3 756,885 - +0.2 756,885 - -0.2 756,885 - +0.2 756,885 - -0.6 756,885 - -0.8 756,885 - -0.7 756,885 - +0.2 756,885 - +1.1 756,885 - -1.3 756,885 - +0.2 756,887 + -0.0 756,888 - -1.4 756,888 - +0.0 757,084 - GFF701 0.11 +0.6 757,098 + GFF701 0.12 +0.1 757,098 + GFF701 0.12 +0.3 757,099 - GFF701 0.12 -0.4 757,378 - GFF701 0.44 +0.3 757,378 - GFF701 0.44 +0.3 757,689 + GFF701 0.80 +1.0 757,689 + GFF701 0.80 +0.5 757,690 - GFF701 0.80 +0.3 757,690 - GFF701 0.80 -0.2 757,794 + -0.2 757,794 + -0.5 757,815 + +0.2 757,816 - -0.2 757,816 - -0.3 757,816 - -0.7 757,952 + +0.2 757,952 + -0.1 757,952 + -0.5 757,952 + +0.4 757,953 - -0.2 757,953 - -0.1 757,953 - +1.8 757,953 - -0.4
Or see this region's nucleotide sequence