Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6996 and GFF6997 overlap by 4 nucleotides GFF6997 and GFF6998 are separated by 1 nucleotides GFF6998 and GFF6999 are separated by 46 nucleotides GFF6999 and GFF7000 are separated by 8 nucleotides GFF7000 and GFF7001 overlap by 4 nucleotides
GFF6996 - Flagellar hook-basal body complex protein FliE, at 13,898 to 14,263
GFF6996
GFF6997 - Flagellar basal-body rod protein FlgC, at 14,260 to 14,709
GFF6997
GFF6998 - Flagellar basal-body rod protein FlgB, at 14,711 to 15,094
GFF6998
GFF6999 - Flagellar P-ring protein FlgI, at 15,141 to 16,277
GFF6999
GFF7000 - Flagellar L-ring protein FlgH, at 16,286 to 16,888
GFF7000
GFF7001 - hypothetical protein, at 16,885 to 17,895
GFF7001
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 14.337 kb on - strand, within GFF6997 at 14.439 kb on - strand, within GFF6997 at 14.702 kb on + strand at 14.915 kb on + strand, within GFF6998 at 14.979 kb on + strand, within GFF6998 at 15.805 kb on + strand, within GFF6999 at 15.847 kb on + strand, within GFF6999 at 16.229 kb on + strand at 16.362 kb on + strand, within GFF7000 at 16.362 kb on + strand, within GFF7000 at 16.363 kb on - strand, within GFF7000 at 16.719 kb on - strand, within GFF7000 at 16.719 kb on - strand, within GFF7000
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 14,337 - GFF6997 0.17 -1.8 14,439 - GFF6997 0.40 -0.5 14,702 + -0.7 14,915 + GFF6998 0.53 -0.8 14,979 + GFF6998 0.70 -0.3 15,805 + GFF6999 0.58 +0.8 15,847 + GFF6999 0.62 +0.8 16,229 + +0.9 16,362 + GFF7000 0.13 +0.4 16,362 + GFF7000 0.13 -1.3 16,363 - GFF7000 0.13 -0.0 16,719 - GFF7000 0.72 +0.4 16,719 - GFF7000 0.72 -0.2
Or see this region's nucleotide sequence